barSeed - Barley Seed Development Database

Probe CUST_5884_PI390587928

Source Contig U35_9241

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5884_PI390587928	Hv_44K_v2	GCTCCTAAATCAACGGGAGCATTATATCGCGTGGTATAGCGGTATTCTTTTCTTAAAAAA	834	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360542	2420	3e-21	2366 - 2419	100	54 / 54	plus	ABC25398
JLOC1	JLOC1_34028.1	930	2e-21	863 - 916	100	54 / 54	plus
Harvest21	ABC25398	586	3e-25	11 - 70	100	60 / 60	minus	ABC25398
Harvest35	U35_9241	904	3e-25	835 - 894	100	60 / 60	plus

Contig Sequence (904 bp)

>U35_9241 904 Hv_44K_v2
TACACAAGGCAGATTCTCAATGGATTGGTTTATCTCCATGAGAGAAATGTGGTCCACAGA
GATATCAAATGCGCCAATATATTGGTTCATGCAAATGGATCGGTAAAACTTGCAGATTTT
GGGTTGGCAAAGGAGATGTCCAAAATTAATATGCTGAGATCATGCAAAGGAAGTGTTTAT
TGGATGGCACCTGAGGTTGTTAATCCTAGAAAAACATATGGGCCTGCAGCTGATATGTGG
AGCTTGGGCTGCACTGTATTGGAAATGCTAACCCGCCAAATACCATATCCTAATGTCGAG
TGGACAAATGCTTTCTTTATGATTGGAAAAGGAGAACAACCTCCCATTCCCAGCTCCTTG
TCAAAAGAAGCTCAAGATTTCATACGCCAGTGTGTAAGAGTCGATCCAGACGAGCGACCT
TCCGCATCACAACTTTTGGCGCACCCATTTGTTAACAGGCCACTTCGAGCTTCTTTTGAT
TCTTTGTCTCCTCCGATCAATAGGCCATAGTATTAGTGTGGTTTCTCTGTTTATGCAACC
ACGGTCCACGGCTCATCTCCTGATTTGATCTTCGTGATCTTCCACCATGGGGGACCATGC
TTTAGGAGGACGTAGTTGAGCATGTGCAGTCAAATAGGATGATGGGTGAGCGTGAGCACT
GACCATGTTTGTTGGATTGCTTGTGCATTTTCTTCATAGGCAAAGTTTTCGATAGATTTT
GTTGTACAACTTAGTGGAGAAAAGAGTTGGACCTGCAGTGTTGCTAGGGCGACCTGCTCT
GCTGTTTTGTAAATGTTTGACCACTGGCTATTATTCTTTACCCCATGGCTTGTTGCTCCT
AAATCAACGGGAGCATTATATCGCGTGGTATAGCGGTATTCTTTTCTTAAAAAAAAAAAA
AAAA

Homology of Contig U35_9241 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g49640.2	655	1e-101	protein\|STE_MEKK_ste11_MAP3K.14 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed
Brachypodium v1_2	Bradi1g10970.1	647	1e-109
Arabidopsis v10	AT4G08500.1	608	3e-59	\| Symbols: MEKK1, ATMEKK1, MAPKKK8, ARAKIN \| MAPK/ERK kinase kinase 1 \| chr4:5404272-5407062 REVERSE LENGTH=608