barSeed - Barley Seed Development Database

Probe CUST_5882_PI390587928

Source Contig U35_9243

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5882_PI390587928	Hv_44K_v2	CTACGCAAGAAAGATGAAAATTCTGCCAAGGTGTTCACAACCCCTGTTAAGAATGTGCCT	1021	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.771	1.628	1.244	0.574	0.295	0.282
Raw	547.883	715.229	516.934	357.902	66.640	70.220

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66657.3	1975	2e-23	531 - 588	100	58 / 58	plus	None
MLOC	MLOC_66657.1	2700	2e-23	1250 - 1307	100	58 / 58	plus	None
MLOC	MLOC_66657.2	2558	2e-23	1108 - 1165	100	58 / 58	plus	None
JLOC1	JLOC1_43954.1	4790	1e-23	1164 - 1221	100	58 / 58	plus
Harvest35	U35_9243	1107	3e-25	1022 - 1081	100	60 / 60	plus

Contig Sequence (1107 bp)

>U35_9243 1107 Hv_44K_v2
TTCCGCTCCGCTCCCCCCGCCGGCCTCAGATACAAGCCCTAACCTAGCCGGAGACCAGAG
GAGGAGCCCTCCTCTTCCTCCTCCCCCCTCCAGCTGTTGCTGCTCCGCCATGAATAACTT
CCACGTCTACGAGGCCATTGGCCGCGGCAAGCACTCGACTGTCTACAAAGGGCGGAAGAA
GAAAACCATCGAGTACTTCGCTGTCAAGAGCGTCGACAAGTCGCAGCGCTCCAAGGTCCT
CAACGAGGTCCGGATGCTTCATTCTTTAGATCATCCAAATGTCCTGAAATTTTTCTCTTG
GTATGAAACTTCAGCACATTTCTGGCTAGTATTGGAATATTGTGTCGGTGGAGACCTCAA
GGGCTTGCTTGAGCAGGATAAGAAGCTACCTGAAAGTGCCATGCATGACCTGGCTTATGA
TCTTGTCAAGGCCCTCCTGTTCTTGCATTCACAAGGAATTATATATTGTGATCTGAAGCC
ATCTAACATTCTACTGGACGAGTTTGGATGCATGAAGCTGTGTGATTTTGGATTAGCAAG
GCGTTTAAAGGACATTGAGAAGACTGATCCTGGAGATGTGCCACAACCTATGAGGGGGAC
ACCATGTTACATGGCTCCTGAGTTGTTCCAAGAGGGAGGGGTCCATTCGTATGCTTCTGA
TTTCTGGGCCCTTGGTTGTGTGCTATATGAATGCTATGCAGGAAGACCTCCTTTCGTGGG
CCGTGAATTTACCCAGTTGGTCAAATCCATACTTTCAGAGCCTGCACCACCTTTACCTGA
TAACTCGTCAAGGTCTTTCCAGAATCTGATCAACTGCTTACTCATGAAAGACCCAGCTGA
AAGACTACAGTGGTCTGAACTATGTGCACACAACTTTTGGAGAAACAGTATGCCAATGAT
TCCTTTACCTCCTCAACCTGCCTTTGACAACATGGTTGGACTTCCCACTACACCTTATTT
ATCTGAGCGAAATGATGATAAACCCTCCAGACAGCTGACGCCACCCAAGACTCGTGAACA
CCTACGCAAGAAAGATGAAAATTCTGCCAAGGTGTTCACAACCCCTGTTAAGAATGTGCC
TAAAAAAAAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_9243 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g15480.1	1347	0.0	protein\|EMB3013, putative, expressed
Brachypodium v1_2	Bradi2g09370.1	1350	0.0
Arabidopsis v10	AT5G18700.1	1366	1e-148	\| Symbols: RUK, EMB3013 \| Protein kinase family protein with ARM repeat domain \| chr5:6235387-6240733 REVERSE LENGTH=1366