barSeed - Barley Seed Development Database

Probe CUST_587_PI390587928

Source Contig U35_38044

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_587_PI390587928	Hv_44K_v2	TGCCTGTGTCCATCTGATTGCATACATACATCAGATAACGTGCCCTTGTTTTTGAAAAAA	544	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56286.1	3563	9e-22	111 - 165	100	55 / 55	minus	ABC33830
MLOC	MLOC_56286.3	1730	9e-22	2 - 56	100	55 / 55	minus	ABC33830
MLOC	MLOC_56286.2	1915	9e-22	108 - 162	100	55 / 55	minus	ABC33830
JLOC1	JLOC1_36390.2	1775	5e-22	1598 - 1652	100	55 / 55	plus
JLOC1	JLOC1_36390.1	1365	5e-22	1188 - 1242	100	55 / 55	plus
Harvest21	ABC33830	615	3e-25	545 - 604	100	60 / 60	plus	ABC33830
Harvest35	U35_38044	615	3e-25	545 - 604	100	60 / 60	plus

Contig Sequence (615 bp)

>U35_38044 615 Hv_44K_v2
GCACAGATACTGGAAATGGGGATTGTGTCGCACTCCGTGATCATTGGGCTGTCGCTTGGG
GTGTCTCGGAGCCCCTGCGCAATCAGGCCATTGGTGGCAGCGCTCTCATTTCACCAGTTC
TTCGAGGGGTTTGCCCTTGGTGGGTGCATCGCGCAGGCTCAGTTTAAGAACCTTTCGGCA
GTCATGATGGCCTCCTTTTTTGCCATTACAACACCAACTGGTATCGCTGCTGGGGCTGGT
TTGTCCTCATTTTACGACGCAAATAGCCCCAGGGCTCTAGTGGTGGAAGGCATCCTCGAC
TCTGTGTCGGCCGGCATACTCATATACATGGCGCTGGTGGATCTCATCGCAGCCGATTTC
TTGGGTGGGAAGATGACAGGGTCGGCACGACAACAAGTGATGGCATATGTTGCGCTGTTC
CTAGGTGCACTCTCCATGTCATCGCTTGCAGTCTGGGCCTGAACTGGTTTAATGAGATGG
AGGTAGCGGACGATCTCTACGTCTCAACATACTGCCTCTGATACATGTACATAACTAATG
CATGTGCCTGTGTCCATCTGATTGCATACATACATCAGATAACGTGCCCTTGTTTTTGAA
AAAAAAAAAAAAAAA

Homology of Contig U35_38044 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g10940.1	385	1e-78	protein\|metal cation transporter, putative, expressed
Brachypodium v1_2	Bradi2g33110.1	389	1e-81
Arabidopsis v10	AT1G10970.1	408	2e-61	\| Symbols: ZIP4, ATZIP4 \| zinc transporter 4 precursor \| chr1:3665201-3666933 REVERSE LENGTH=408