- Probe CUST_5878_PI390587928
- Source Contig U35_9247
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_5878_PI390587928 | Hv_44K_v2 | GTGGCTTCCTGTTCATGCTAAAGCAAATATTTTATAGCCATGAATAAAGTTGGATTCTGA | 298 | GeneList: midnightblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.264 | 0.279 | 0.529 | 1.802 | 1.846 | 3.097 |
| Raw | 90.930 | 157.093 | 259.432 | 1367.912 | 496.170 | 906.397 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_1733.1 | 786 | 2e-24 | 108 - 167 | 100 | 60 / 60 | minus | ABC15508 |
| MLOC | MLOC_1734.1 | 783 | 2e-24 | 301 - 360 | 100 | 60 / 60 | minus | ABC15508 |
| JLOC1 | JLOC1_1060.1 | 531 | 8e-25 | 35 - 94 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC15508 | 378 | 3e-25 | 299 - 358 | 100 | 60 / 60 | plus | ABC15508 |
| Harvest35 | U35_9247 | 378 | 3e-25 | 299 - 358 | 100 | 60 / 60 | plus |
Contig Sequence (378 bp)
>U35_9247 378 Hv_44K_v2 GGCTCAGGCTCGGGCTGCCGCGGCTAGGCGCGGGCGGGCTTTGGCGAGCGCTGTCGCGGC CAAGCGTGATCGGGCGCGGGTGGCACATGCGCCTCGCATTGGGAGTCGACGAGGACGACG TCGCAGGTGGGCGATACGGGAAGGAGGCCGAGGACCATCGTCGGCGCTGGGCGCCGCGCG CTAGAGGGCGTTGCCCTGCAGGGAGCCGCATCGCGTCGTGCGCCAAGGCGATGCCGAGTG CTGTCGCTGGCAGTGGGCTCGAGCACGGGAAGGGCCTCGTCGGGGCAAGACTTGCTTCGT GGCTTCCTGTTCATGCTAAAGCAAATATTTTATAGCCATGAATAAAGTTGGATTCTGATT GAAAAAAAAAAAAAAAAA
Homology of Contig U35_9247 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |