barSeed - Barley Seed Development Database

Probe CUST_5877_PI390587928

Source Contig U35_9248

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5877_PI390587928	Hv_44K_v2	GAATGTAGGTAGAAGTAGAAAATTATCTTACTGTAGCTTTTAGACCATCCATGAAAGGCA	968	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369512	3251	7e-23	3135 - 3195	98	60 / 61	plus	ABC20389
MLOC	MLOC_18723.7	1485	7e-23	1202 - 1262	98	60 / 61	plus	ABC20389
JLOC1	JLOC1_12963.3	2937	4e-23	2577 - 2637	98	60 / 61	plus
JLOC1	JLOC1_12963.2	2959	4e-23	2599 - 2659	98	60 / 61	plus
JLOC1	JLOC1_12963.1	2948	4e-23	2588 - 2648	98	60 / 61	plus
Harvest21	ABC20389	1031	3e-25	4 - 63	100	60 / 60	minus	ABC20389
Harvest35	U35_9248	1031	3e-25	969 - 1028	100	60 / 60	plus

Contig Sequence (1031 bp)

>U35_9248 1031 Hv_44K_v2
GAACACCAGCAGCCAAATCTCAGCTTGTTCGGCTGCAAACGGGAGGTACATCATTTCTGC
AAGTGAGGATTCACGTGTATATATCTGGAGATACAGTGATGATTCCAAACCAAGCAGAAA
GAAGAACATTGTTCCTGTCACAAATACCCATGAGAACTTCCACTGCGAGAGAGTAACAGT
TGCTGTTGCTTGGCCTTGCGCCGGCGCCAGAATGACTTCTAGAGCCAACTCCAGGAAGCA
AGATAACCTGGACTGTGTGTCTGGTAATGGCCATATACTTGGATTTGAACCTGTTAAAGA
GGATGATTCTCCTGCTGTTCAGCACCAGAGCAACAATGGTGACAGGGCATTTGCGACTTG
GCCCGAAGAGTTAATGACAAAAACAAAACAAAGCCCCAGGTCTAATACAACCCATCCCGG
TGATGTAGATCAAGCTCCGAGTCCGCCGGCCTGGGGCTTGGTGATCGTGACAGCAGGCCA
TGATGGTCAAATCAGAACATATCAGAACTTCGGTTTTCCAAGTATAACATCCATCTGAGT
ACTCGTAGACATTGCATTGCAGGACTATAGTTTTGTGTACATAGATGGAGATAACGGGTG
AGTTGCACAGCATTGAAGGATTGACTGAGGTTGCTCCTTGGTGCGCCTGCTTCAGAATTT
CGGAATCTTCGACTAACATATTGTCAGGGCGCAGCTACTTCGATTCGGTATGACATTCAT
TTACTCTAAATTGTACATGAAAGTGAAGCCCTAGAGTGACGCCTGTCAGCTGGTTGGAGT
GATATCTTGCTCCTCTCATCCAGCAGCTTCGACCTTGTAGCAATTGTCTATTCGCCCTTT
CCATATTTCTCTTCTTTATGTTATATATTTTTTGTAAGAAAGAAAAATCTCAGTGCTACA
AAAACGAGAAAATCAAAAGAGTTACACATAGGGTGGCAGAAATCGTTCTGCTGGTTTTCC
TTTCCTCTGAATGTAGGTAGAAGTAGAAAATTATCTTACTGTAGCTTTTAGACCATCCAT
GAAAGGCATTT

Homology of Contig U35_9248 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g42590.1	773	6e-61	protein\|WD-40 repeat family protein, putative, expressed
Brachypodium v1_2	Bradi3g49817.1	797	5e-93
Arabidopsis v10	None