barSeed - Barley Seed Development Database

Probe CUST_5868_PI390587928

Source Contig U35_9257

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5868_PI390587928	Hv_44K_v2	GAATATACCATACGACGTTGGGAACATCTTGTTAGGTCGAGCAGATCATTAACATTATAA	642	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67541.1	947	2e-24	859 - 918	100	60 / 60	plus	ABC19867
JLOC1	JLOC1_44611.1	857	8e-25	775 - 834	100	60 / 60	plus
Harvest21	ABC19867	702	3e-25	643 - 702	100	60 / 60	plus	ABC19867
Harvest35	U35_9257	702	3e-25	643 - 702	100	60 / 60	plus

Contig Sequence (702 bp)

>U35_9257 702 Hv_44K_v2
GCCCACATCCCTCCACGATGGCACGCAAGCTCATGTACCCACAGAGCCTCGCAGTGCTCG
CACTCGTCGTGGCAGCGGCCTGGACGCCGTGCTCCGCCGACACCACGGTGCCAACCAACG
CCACAGCAGCGGCAACCGGAGACAACGTAGCCGCCCCAGGTGCGCCGGTGGGTTCAACAG
TCGCCTTGCCAGCAGCCGGTGCGGCGACGGCGCAAGCCACGGCCACGGCGTCCAAGAAGA
TCCCGTTGGCGCCACCGGACGTGTTCGAGCCGGCGGCAGAGGTGGCGTCGGCGCTGCCGG
TGCCGGTGCCGGAGACACTTCCCAGCGCAGAAGGTCTCGGCTTCGGCAGCAGCGGGTTCA
ACGGTGGCCAGGGCGGCTTCGGAGGATGCTGCGGAGGAGGGTTCGGGTACAACGGCGGTC
TCGGGTACAATAACGGACCGTTGTTCTTCAACTCGGCGCCGGCGGCCGGAAATGGCCTAG
CGGCTCTGCTGCTTGCTGGTGCTGCGGCCGTGTTTTCTGTGTGATTTGTATTTCTGTTTC
TATTTTATTCTATCTTATTTCCGCAAGGGGCATGCATATACATATGTTTGCATCAACTGA
CATGTATCACATGTTTACTTCAAATTTAAAGAAAGGTCATACGAATATACCATACGACGT
TGGGAACATCTTGTTAGGTCGAGCAGATCATTAACATTATAA

Homology of Contig U35_9257 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None