barSeed - Barley Seed Development Database

Probe CUST_5866_PI390587928

Source Contig U35_9260

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5866_PI390587928	Hv_44K_v2	TTTTATCATAGAGGAGGAGTTTAGGTTGGATGAGCCTGATAGATTAATTGAAGCTGAGTC	675	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15858.3	1982	7e-23	980 - 1039	98	59 / 60	plus	ABC21181
MLOC	MLOC_15858.4	1700	7e-23	978 - 1037	98	59 / 60	plus	ABC21181
MLOC	MLOC_15858.1	2493	7e-23	1493 - 1552	98	59 / 60	plus	ABC21181
MLOC	MLOC_15858.2	2093	7e-23	1061 - 1120	98	59 / 60	plus	ABC21181
JLOC1	JLOC1_10903.2	2263	4e-23	977 - 1036	98	59 / 60	plus
JLOC1	JLOC1_10903.1	2429	4e-23	1143 - 1202	98	59 / 60	plus
Harvest21	ABC19884	738	3e-25	676 - 735	100	60 / 60	plus
Harvest35	U35_9260	738	3e-25	676 - 735	100	60 / 60	plus

Contig Sequence (738 bp)

>U35_9260 738 Hv_44K_v2
GAAGAAGATAAAGAGAGAGGAGGGTTCTGCAGGGGAGAATGATATTGGCCACAGTCGAAG
CAGCAAGCCCAACGCTCAAGGTGTTCTTGCACTGGGCTGCTCAAGAAACCCTGGATCCTC
TGATGCCTCGCAGTTGCCCTCAAGAGACACCCCTGTGCCAGTGGAAAATAGGGTGAGAAA
AGTTAAGCTCAAGGTTAGCGGACTTAACCGAATCATACCGAAGCAAGAGCCTGTTGACGT
CGCCATGCCTGGCACATCGGATGTCTCTTTCCATCGCCAAAAGCAGAAGGATTCTGGTGA
GCAGAAACATCACAGCACAAGAAAGGATGGTCATGGTAATCACGCTGATGGAAAACGTGG
AGATAAGCATGACATTTCACCATCTTCTGAACTGATTCGCAAAAGCAAAAGGGTCCCTAA
GAAGCGAACTCTTGATTCTGATGATGAAGATCGTGAATTACGTTATCTTGAAAAACTTAA
AGTGGCTAAAGTTGCACCAGAACAGCCCATGTCTACTGACCATCCTCTAGCTTATGGCGA
GGATGGTCTCAGGAAAAAGAAGCTAACCAAGGTTTCTAAAAATAAGAGCACTCCATATGA
AGTGGACAACGACTTCACTATGTCACAATTTGGCAGAGATGCTAGGAAGAAGGTGAAACT
GGAGGATACCAATGATTTTATCATAGAGGAGGAGTTTAGGTTGGATGAGCCTGATAGATT
AATTGAAGCTGAGTCACC

Homology of Contig U35_9260 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g59680.1	524	1e-57	protein\|PAPA-1-like conserved region family protein, expressed
Brachypodium v1_2	Bradi1g04270.1	531	2e-93
Arabidopsis v10	None