barSeed - Barley Seed Development Database

Probe CUST_5861_PI390587928

Source Contig U35_7712

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5861_PI390587928	Hv_44K_v2	TGAGGTCCTGTAAAATGCACCTGCTTATCTTGGTAACCATGAGGTTGCTATTCATCCAAA	699	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361510	2953	3e-21	2791 - 2847	98	56 / 57	plus	ABC10844 ABC21311
MLOC	MLOC_21877.1	1900	3e-21	1771 - 1827	98	56 / 57	plus	ABC10844 ABC21311
JLOC1	JLOC1_15166.1	3370	2e-21	1771 - 1827	98	56 / 57	plus
Harvest21	ABC21311	620	1e-23	20 - 76	100	57 / 57	minus	ABC21311
Harvest35	U35_7712	773	3e-25	700 - 759	100	60 / 60	plus

Contig Sequence (773 bp)

>U35_7712 773 Hv_44K_v2
CAAAGCGTCAGCAACCGTTCAGCCTTTCCTGCTGCTCCATCTGATATATTTCCCAGATGC
TGTTCAAACGCTGNATGATGCACTTCATCTGTTTTCCACCCCCGAATCTTTGGAAGGATA
CAGAACAACTGCTGGAAAGGCCGGAGTGGTGACAGCCAGGAAATCATTCAAGATACACGA
ACTTTCGAAGATAATGATACTGCATTTGAAGAGATTCAGTTATGGAAATCGTGGGTGTAC
TAAACTGTACAAGCCACTCCACTTCCCTCTTGAACTCGTCCTTAATCGGGACCTGCTGAG
CTCACCATCATCAGAGGGTAGAAGATACGAGCTCGTTGCAACCATCACTCATCATGGGAG
TGGCCCGGCCAGGGGCCATTACACCGCTGATGCCAAGCGTGACGGTGGGCAGTGGCTTCG
GTTCGATGATGGACATGTCATGCCCATCCATGTGAACAAGGTCTTGCACAACCCAGCATA
TATCCTGTTCTACAAGCAAGTGTAAGTCTGGGGTTGCCATGTGGTTGATCATCTTATTGC
TGGACCAGTCAAGTCATACTGTCTAACTATCGTTGTGTTAATGGTAGCTCGCAGAGTCGA
GTGTGTCAAGTACCCTGGTTGGTTGCGTGACTCTATTTATATATATATGCCTGGTAATGT
AGTGATGAGGGGGGTGGGCTTTCCCGCTCAGCCCATTTTTGAGGTCCTGTAAAATGCACC
TGCTTATCTTGGTAACCATGAGGTTGCTATTCATCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_7712 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g46660.2	556	2e-85	protein\|ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
Brachypodium v1_2	Bradi1g18790.2	649	1e-91
Arabidopsis v10	AT4G30890.1	551	3e-66	\| Symbols: UBP24 \| ubiquitin-specific protease 24 \| chr4:15036383-15038825 REVERSE LENGTH=551