- Probe CUST_585_PI390587928
- Source Contig U35_38046
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_585_PI390587928 | Hv_44K_v2 | AGGAATTCATTAGGACGCTGTTTCAGCTTATTATTCTCTTTGTTTCTTGTGCATTTGTCT | 224 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.145 | 0.290 | 0.963 | 1.390 | 1.222 | 2.244 |
| Raw | 2.801 | 14.811 | 47.554 | 113.126 | 31.744 | 65.699 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_67255.1 | 732 | 2e-24 | 603 - 662 | 100 | 60 / 60 | plus | ABC33836 |
| JLOC1 | JLOC1_44387.1 | 690 | 8e-25 | 513 - 572 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC33836 | 379 | 3e-25 | 225 - 284 | 100 | 60 / 60 | plus | ABC33836 |
| Harvest35 | U35_38046 | 379 | 3e-25 | 225 - 284 | 100 | 60 / 60 | plus |
Contig Sequence (379 bp)
>U35_38046 379 Hv_44K_v2 GGCTTGCAGGCTCCCGGAGGCCTGCGCCGTCGTCCGCCGCGTGCTCACCGCCTACCTCTC CTGGCTGCGCCTTGCCTACGCGCGCGGCGGCACTGTCTGGGGCCGCCGAAGCCGCGACAA CGACGACGTCTTCCGCCAGGCGCTGCTCGAAGTCTCCTACTGACCGAGTTGCAAGGCAGA GCGCCGCGCGGTGGTGGCGCTCGCTGCTTCCATTGCCTTGGCTTAGGAATTCATTAGGAC GCTGTTTCAGCTTATTATTCTCTTTGTTTCTTGTGCATTTGTCTTTTTTTTTACCGAGAT GTGTGGTTTAGGAATAATCTGCAGTGGTAATATTTTTTGATATGTATAAAAAGCATAGTT TTAAAAAAAAAAAAAAAAA
Homology of Contig U35_38046 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |