barSeed - Barley Seed Development Database

Probe CUST_5859_PI390587928

Source Contig U35_7714

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5859_PI390587928	Hv_44K_v2	TTTATCGCAAGGCATGTCGACATTATGTCGCCAGCTTTGACCAGGCTTTCAACCAAAACT	536	GeneList: plum2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.189	0.158	0.867	2.762	1.496	1.544
Raw	2.680	2.810	31.168	138.866	31.498	33.896

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60720.3	585	2e-24	519 - 578	100	60 / 60	plus	ABC16352
MLOC	MLOC_60720.1	1709	2e-24	1631 - 1690	100	60 / 60	plus	ABC16352
MLOC	MLOC_60720.2	602	6e-24	544 - 602	100	59 / 59	plus	ABC16352
JLOC1	JLOC1_39622.1	2088	8e-25	1663 - 1722	100	60 / 60	plus
Harvest21	ABC16352	622	3e-25	27 - 86	100	60 / 60	minus	ABC16352
Harvest35	U35_7714	622	3e-25	537 - 596	100	60 / 60	plus

Contig Sequence (622 bp)

>U35_7714 622 Hv_44K_v2
GCACGAGGTGGCTGCATAGTTCAGGCAAAGTTCAAGGCTAGTTCCGTCGTGACCATGATC
CTCTTCTTCTGCCTCACAACGCCGGTGGGGATCGCCGTCGGCTTTGGGATATCGCGAGTG
TACAACGAGAACAGCCCGACGGCGCTGGTGGTGGAGGGCAGCCTCAACTCGGTGGCGGCG
GGGATCCTCGTCTACATGGCCCTCGTCGACCTCCTCGCCGAGGACTTCATGAACCCCAAG
GTGCAGAGCAGGGGGAAGCTTCAGCTCGGCATCAACATCTCCATGCTGGTCGGTGCAGGC
CTCATGTCCATGCTCGCCAAATGGGCCTAGCCGCAAGCCTACAACATGAAACAGTTTCCC
TACAACATGAACCAGTTTTGCTCCATGACATATATATGTACAGACGTCCCCCTATTGGGT
CGTCGAATTTGAAACGATATAATCTCCCAAACTAGGTAATGCCAACCCAGTAGCTTAGGC
ATATAAAGAAAACTAGTTCTGGACTGAAAGTTTGGGAGGTGCGCAAAGTGTGAGTGTTTA
TCGCAAGGCATGTCGACATTATGTCGCCAGCTTTGACCAGGCTTTCAACCAAAACTGATG
GACAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_7714 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g12890.2	358	2e-57	protein\|metal cation transporter, putative, expressed
Brachypodium v1_2	Bradi1g53680.1	367	6e-62
Arabidopsis v10	None