barSeed - Barley Seed Development Database

Probe CUST_5857_PI390587928

Source Contig U35_7717

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5857_PI390587928	Hv_44K_v2	CCTTTTGGTTGGTACTTGGTAATGCAAGAGGATAATATTCTGCTCCAAAGCTTGCTGAAA	1164	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.936	1.468	1.965	1.107	0.319	0.316
Raw	1758.538	4247.797	4941.947	4464.864	438.012	476.030

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_35228.1	1803	2e-24	139 - 198	100	60 / 60	plus	ABC12733
MLOC	MLOC_35228.2	1800	2e-24	139 - 198	100	60 / 60	plus	ABC12733
Harvest35	U35_7717	1238	3e-25	1165 - 1224	100	60 / 60	plus

Contig Sequence (1238 bp)

>U35_7717 1238 Hv_44K_v2
GAGGATCCAGCACGCCACTACAGGCACCAAGCCCGCCCCGGCGGGCGCTGCCGCGGCGCG
GGCCAAGCCGTTCCCCAGCAAGCTGAACGCCATCCGCGAAGAAGGGCAGGCATCCAGGCA
GCAGCCCGCGGTCCCCGCCAAGCTATGGCCGTCGAGCAACGCCAGACAGCCGCTGGACAG
CAGCAAGCAAGGAACAGCGGCCAGCAGGGCCAAGGCGAGGAGCTCCAGCATGAGCCCCAG
GGCCAGGAGGCAGTCCATTGCCAGGGCCACGAACAGCACAAGGGGAGGCGTCGCCGCATT
CGGGGCTGCCAAGGTGGTGGCCGACCAGCTCACGCCCAAAGCTGCCATGAACCACATCAG
CACTGCGTCCACCTGCAGGAGGCCGGCAGGGAGCTCCAAGGTCAGGGTCGTCCCGAGCCG
CTACAGCCTCATGCCCGGCGCATCCCTGGGAGCCGCAACACAAGATGGTCGCCGCAAGGA
GTCTCTCCCGGGATCAACAGGGAGCACAGGCCAGAAGGAGGAGATCAAAGCGGTGCCCAC
TGAGCCTGTCGATGATGATCTGTCTCCTGAATCACTGGACAAGGTTGCTGAACTGCTCCC
GAGGATCAGGACCATGCCGCGTCCCAACGAGACTCCCCGCGACTCAGGATGCGCGAAGCG
CGCCGCCGATCTGGTCGGGAAGCGATCCTTCTTTGCCGCGGCCGCAGCCGGCGATGGCAG
CGCCATTTCCTCCTACCAGGCGCGGGTCCTTGAAGCCGAGGCACCGGAGGAGGCAGCAGC
AGCAGGGGCCTTGAGCGATGAGGCAGCAGCAGCAGGGGCCTTGAGCGATGAGGCAGCAGC
AGCAGCAGCAGCAGCAGAAGCCTTGAGCGATGAGGCGGCAGCAGCAGAAGCCTTGAGCGA
TGAGGCAGCAGCATGATTTTGATCCATTGATGATTGGCCGGGGAGTGCTTGCTTAACTTG
AGCATTTGGGTGAGGCTTTTTGCAGCGTGTTATATAGTCAGTCTACTGTTACATTCGTAT
CTCATGCTTTGTTTGCCATTTCATTCGTTAAGGACCTGCTTAGAGTGTGAAGAAGACCTT
TATCCGGGTGCTATTGTTTTTAGTTTTACCTGTCGGTCAGTGTGCTCTGTTCTGTGTAAG
TAGTGTCATGGTGTGGTTCAGAAACCTTTTGGTTGGTACTTGGTAATGCAAGAGGATAAT
ATTCTGCTCCAAAGCTTGCTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_7717 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g46990.1	432	3e-51	protein\|expressed protein
Brachypodium v1_2	Bradi1g33080.1	457	8e-71
Arabidopsis v10	None