barSeed - Barley Seed Development Database

Probe CUST_5855_PI390587928

Source Contig U35_7719

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5855_PI390587928	Hv_44K_v2	CAAGCCCTTTGTTGGATTGCTGAGTCCAAATCCAGAATATGCATCTTGTACTCGCGTAGA	735	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.045	1.481	1.902	1.865	0.659	0.799
Raw	70.005	164.265	172.911	283.911	33.106	43.196

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19070.1	1283	2e-24	905 - 964	100	60 / 60	minus	None
JLOC1	JLOC1_13221.1	1069	8e-25	190 - 249	100	60 / 60	plus
Harvest21	ABC15287	793	4e-24	736 - 793	100	58 / 58	plus
Harvest35	U35_7719	795	3e-25	736 - 795	100	60 / 60	plus

Contig Sequence (795 bp)

>U35_7719 795 Hv_44K_v2
CATTGCCGCCGGAGAGGATATCATATCAAGGGTCATGGCGGTCTCACAGCTAAATTCGAA
GGCCATCTGCATTCTTTCAGCTCTTGGGTCTGTTAAGGAAGCAGTTCTAGTCCAGCCATC
TGGTGTCACTCTAACTCACAAGGGTCCTTTAGAAATCATCCGGCTGTCTGGATCCATTTT
GACATCTAATGACCATCGATCTCTGCGTATTACCCTTGCTTCCGTCAATAGTCTTGTGAT
CAGTGGCATTATAGCTGGACCTCTCATAGCTGAAACTCCTGTCCAGGCAATTCTTGGAAG
CTTTCACAACAGTGCGTTCTCTCCAAACAACGCACCTAGGGCAACCATGGCGTGTTATCC
AAACAAGCAAGGTGCCACCGGAAATGGCAACACTCTACCCAGTGATCGTTCCAATCCACA
ATTTGCATCTCGTACTTTGGTGGGACAGAATGAATCAAGTGACATTGATGTCAAGCCCTT
TGTCGGATTGGTTAATCCAAATCCAGAATATGCATCTCGTACTTCCATGGAACAGCGTGA
ATCATATATGGCAATTCTTCGAAGCTTTCACAACAGTGGATTCTCTCCGAACAACACATC
TAGGGCAGCCATTGCGTGTTATCCTAATATGCAAGGTGCCACCGGAAATGGTAACACTCT
ACCCAGTGACTTTTTCTACCCACAATATGCATCTCGTACTTCCGTGGAACAGCATGGATC
AAGTGAGGTTGATGTCAAGCCCTTTGTTGGATTGCTGAGTCCAAATCCAGAATATGCATC
TTGTACTCGCGTAGA

Homology of Contig U35_7719 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g01540.1	299	3e-51	protein\|DNA binding protein, putative, expressed
Brachypodium v1_2	Bradi1g78200.1	248	2e-67
Arabidopsis v10	None