- Probe CUST_5849_PI390587928
- Source Contig U35_7725
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_5849_PI390587928 | Hv_44K_v2 | TCTCCTTTTTTGGATGGATAAGTCTCAACCTCATGGTTCTCAAAATAATGATGGATGATA | 344 | GeneList: yellowgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.117 | 3.111 | 2.549 | 0.946 | 0.140 | 0.044 |
| Raw | 2388.488 | 10787.907 | 7399.320 | 4434.626 | 225.318 | 74.115 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_11626.1 | 592 | 8e-25 | 473 - 532 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC15822 | 487 | 3e-25 | 345 - 404 | 100 | 60 / 60 | plus | ABC15822 |
| Harvest35 | U35_7725 | 487 | 3e-25 | 345 - 404 | 100 | 60 / 60 | plus |
Contig Sequence (487 bp)
>U35_7725 487 Hv_44K_v2 CCTACTTACAACAACATCGTCCAGTAATAACCTCTGGTCCTCGATGATGACGACCAAGTG CTTGAGGAACAATGTGCAAGGACTTGTGCTACTTTCTTTTCTTCTTGTGGTGTGTTTGAC TTCTCCTGGATGCACATATGGTGAAACAATAAAGCCGAGCAACATGATGACCAAAGTAAG CCATGTAACCAGGCCCCCTTGTTATAAAGACAACCAAGGCCTTGGACAATTCTGTTGTAA AATAGATAAGTTGTGCTGGACAAATCTTAGTGAATGCTTCATCAACTGTCCCTGCAAGAT TAACTGCAAACGAGCAGCCACAACAACACAGTAGTTTTGTTATCTCTCCTTTTTTGGATG GATAAGTCTCAACCTCATGGTTCTCAAAATAATGATGGATGATATCATAAATTTGCTATG ATTTTGAAATGAAGTGTGTTATTTTAATGTTAAGAAAACTTATCAGTTCAAAAAAAAAAA AAAAAAA
Homology of Contig U35_7725 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |