barSeed - Barley Seed Development Database

Probe CUST_5848_PI390587928

Source Contig U35_7726

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5848_PI390587928	Hv_44K_v2	TAAAGTAGTCGGTGTATGCTGGAATTCACCTCTGCCTTCTGGTTTTTGTCTACTCCCTGA	1065	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.848	2.071	1.516	0.970	0.365	0.433
Raw	572.936	2164.017	1373.853	1385.933	182.155	235.551

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_7726	1129	3e-25	1066 - 1125	100	60 / 60	plus

Contig Sequence (1129 bp)

>U35_7726 1129 Hv_44K_v2
TATACTTGAAGGCGCATTCTTGTCTACCGGAATCCGAGCGCGAGCATCTCTGCCGGCTGA
TCGACTGCCAGAAGCTGTCCCTGGAGGCATGCACCCATGCCGCGCAGAATGAGCGCCTGC
CGCTGCGTGTGGTGGTGCAGGTCCTCTTCTTCGAGCAGCTCCAGCTGCGGACATCCATCG
CAGGGTGCCTGATGGTGTCCGACAACCTGGAAGGATCCTCACGCCCCCTCCATGGCAGTG
GCACCATCGCGACGTCCGGCGAAGCCGGTGCCCGCTGGGTCACGTCGGCGGCGGTGAGGG
AGAACCAGGCGCTCAGGGCTGGCATGGACAGCATGCGTCTGCGGCTGGCAGAGCTGGAGA
GGGAGTGCTCCGGCATGCGGCAGGACATCCGGAAGCTCGGGGGCGCAGCGGGGAAGGACG
GGTGGGCGGCGCGGGTCCAGCGGATGTTCAGCCTGAAGATGAAGCTGCAGATGTGCAGCA
CCGAGGAAGGGAAGATGAGCGACCGGCACAGGACGGCGAGCGCCAAGCTGGAGAAGCTGC
AGGCCAAGGTGTCCAGTCATAAGAAGCACCTCACCATTGATGCATGAGCTCTGAAGCTTT
TACCCTGGCCTGGAACTCCTTTTGGCTTCCATGTTTTTTCCTGCAGAGAGCTTCAGGGCT
GATAGTGCAGTGGCAAGAGTTCTTCAGGTGAAGCTGTCACTGATGACTTCTGAGCCCATT
TGTGATGTTTTGGGTGGTACTGGCAGTGCAGATGGAACCAGCAATGCAATGTAGTAGTAG
TAACTAAGAACTGGAGCAGAGTGACTGAGGCGCGGGTTTCGCGTGAAATGGTTCGATTTC
AGGCATTCGAAAACACCTTTTGGTTTTCATGATTTAGCTAGAGAGTTGCACTGCCCTACC
CCTGCTGCATCTCTAGCTAAAGAGTCGAGTCTTTCATGAGTCAAGTAGGTGTCTCACTGA
AAGTAGAAGCCGTTGTAAAGCAGTGATCAGCTGTGAGTGTATTTTAGGGAAAGTCTTCAA
AGCCCTGCCCATATGCTCTGTGGATTTATTGCATTGCTCAGCTTGTAAAGTAGTCGGTGT
ATGCTGGAATTCACCTCTGCCTTCTGGTTTTTGTCTACTCCCTGAAATC

Homology of Contig U35_7726 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g43990.2	616	2e-66	protein\|BTBN8 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed
Brachypodium v1_2	Bradi4g01780.1	638	1e-97
Arabidopsis v10	None