barSeed - Barley Seed Development Database

Probe CUST_5845_PI390587928

Source Contig U35_7729

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5845_PI390587928	Hv_44K_v2	GATAGGAACCAATCCTATGTAGGAATAGGAATCCATACATATATATTAACCAAAGGGATC	1305	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16947.1	2060	2e-24	1924 - 1983	100	60 / 60	plus	ABC18647
MLOC	MLOC_16946.1	927	2e-24	791 - 850	100	60 / 60	plus	ABC18647
JLOC1	JLOC1_11699.2	922	8e-25	786 - 845	100	60 / 60	plus
JLOC1	JLOC1_11699.1	802	8e-25	666 - 725	100	60 / 60	plus
Harvest21	ABC18647	933	3e-25	85 - 144	100	60 / 60	minus	ABC18647
Harvest35	U35_7729	1449	3e-25	1306 - 1365	100	60 / 60	plus

Contig Sequence (1449 bp)

>U35_7729 1449 Hv_44K_v2
CACGCGTCCGAATTGATGTCATGGACAGTGAGTCAGGTTCAAGATTGTTTGGTTTTATTG
GGGCTGGTGCTACGCTGGGGCAACTTTTTGGTTCTTTGTTTGCTGCAAGCATGGCATGGA
TGGGACCCTTTCTGCTCCTATTTTCCTCCCTCTTGATGGAACTTGCTGCACTCTCATCTA
AAGGAATTTGCATTGATGCTAATCATGGTTCAACAGAATTGCCGTCAACAGGAACCAAGT
CAAATTACCGAGCTTGGTGATGAAATGTCTTCACTGGTCACTTCACCTAGAACACCTTCC
CAATCTCAAAAGACAAAGCCTGGGATTTTTGTGATGTTTGAAGGTTTCTGGCTGATCATG
CGCTCACCCTACCTGGTATACATATCTCTGTTTCTATGGCTGAGTGCAGTTATCTCATCC
TTCTTTTACTTCCAGAAAGTAACTATAGTTGCTACCACAATATCAAGCCCAACTGCCAGA
AGGAAAACATTTGCACTGATAAACAGCTTTATAGCAGTTTTTATTCTTGCCGGACAGCTC
ACTTTGACGGGTCATATCCTTACAGTAGCTGGTATAACAGTTGCTATTTGCGCATCTCCA
TTCATTGCTACCTCAAATTTGGTTGCCCTTGCTGTATGGCCAACTTGGGTTGCTGTTGCT
GTCACTGAAACAATTCGAAAGTGATATTTTCTGGACATGAGAAAAAGCAAGGATTACACA
TACGAGACATAGAGGATGTGGGTGCGCCGTGCGGGAGTGATACGTGTCGGCCCTCATTGT
ATGTTCATGTCCTACTCTTGTGATGCTCCGATGGTCTTCTCCACAGGCGAGCCCTACCAC
ACCTTTGAGCTATGGCAATTCTACATCCTATAATACAAACATGGAATCTGGAGGAGGAAA
TGTAACACATCGCTCTTGTCTCAGTGGCTGAGGACGGGGGTTTGGGGCTATGGCTATTGG
CATTGGGCCAAACCTTTGTGGTGGGGAGATCTAGGCATATTTCAGCTTATATTTGGAAGC
TTGACTGAGTTTCAACTATCTATCTTTTGGCGTAGTCGATGCCACATGGTGGTCACGGGA
GATCGCTGGCCTCTTCTCAGTGAGATCTATTTATGCGGCTCCGATGAGCGACGGGCGATG
ACGGCGGCGCGTCTTCGGCTCGCTTTAGTGCTTGCAGTATGTGCTCTATGAATCTGGATG
TATTTATTATTATTTTTGGTGATTGTTGTACTACAATGTATGAAGATGATAGATCGGATG
TTTCCCTAAAAAAAGTCTAAGCTCATGTTTTTTCTAAATTTGGAGGATAGGAACCAATCC
TATGTAGGAATAGGAATCCATACATATATATTAACCAAAGGGATCTAAAAGAAATTCCTA
GAAAAATATTATTCTATAGAATTTCTATGAAATTCCTCCAGTATGGTGGTGCTTAAAAAA
AAAAAAAAA

Homology of Contig U35_7729 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g02100.1	500	1e-76	protein\|expressed protein
Brachypodium v1_2	Bradi4g25590.2	521	4e-87
Arabidopsis v10	None