barSeed - Barley Seed Development Database

Probe CUST_5844_PI390587928

Source Contig U35_7730

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5844_PI390587928	Hv_44K_v2	TGCTGCTGGCCGACCTCGAGCTGGCCATCGAGAGCATCGAGCGCCTCGCCGACGCCTCCC	353	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357436	3025	2e-24	320 - 379	100	60 / 60	plus	ABC24178
MLOC	MLOC_26182.1	635	2e-24	133 - 192	100	60 / 60	minus	None
JLOC1	JLOC1_17799.1	530	8e-25	131 - 190	100	60 / 60	minus
Harvest35	U35_7730	503	3e-25	354 - 413	100	60 / 60	plus

Contig Sequence (503 bp)

>U35_7730 503 Hv_44K_v2
CCTAAATGCTTCGGGGAGAGGGCCGCACTGCACACGGCGCCTTCTAGTTCCGTTCCAGCC
AGCTCTCGCCCCAAGAGCAAGAAGCGCGATGCCGCCGCCGCCGCCGTCCTCCTCTTCCTC
CCTCCGCGACCTGCTCGCGCGGGAGTGCTCCGAGCTCCCCGAGCCCGCCGCCGCGCCGTG
CCGCACGGTGTCGAGCAGGCACGGTGCCGACGACGCGGTGGGCACGGTGGTGTCGATGCT
TTCCGGGTACGCGGGGCGGTTCTCCAAGGACGCGGAGTTCCGGCGGGCGCTCCGGGAGAA
GTGCGCACCCTGCCTCGCGCCCGCGGGGGAGGCGGCAGCGAAGGAGCACGCCGTGCTGCT
GGCCGACCTCGAGCTGGCCATCGAGAGCATCGAGCGCCTCGCCGACGCCTCCCCGTCCCC
GCGGGACTCCAAGATCCGCTCGCTTCGCAACTCCATCCGCCTCCTCGGCGTCGTCGCCGC
GCTCCACGCGCCGNCAGGTCCCG

Homology of Contig U35_7730 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None