barSeed - Barley Seed Development Database

Probe CUST_5843_PI390587928

Source Contig U35_7731

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5843_PI390587928	Hv_44K_v2	GCAAAATTTGAAGTAGCATTCAAAGAGGATACACATCATTTCACAAGTGTTAGTTCAGCA	572	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375710	1847	2e-24	1699 - 1758	100	60 / 60	plus	ABC10648
MLOC	MLOC_48911.2	1364	2e-24	69 - 128	100	60 / 60	minus	ABC10648
MLOC	MLOC_48911.3	1368	2e-24	69 - 128	100	60 / 60	minus	ABC10648
MLOC	MLOC_48911.4	1171	2e-24	1 - 60	100	60 / 60	minus	ABC10648
MLOC	MLOC_48911.1	2391	2e-24	1182 - 1241	100	60 / 60	minus	ABC10648
MLOC	MLOC_48910.7	2999	2e-24	2780 - 2839	100	60 / 60	minus	None
MLOC	MLOC_48910.5	3785	2e-24	3136 - 3195	100	60 / 60	minus	ABC10648
JLOC1	JLOC1_31358.1	2274	8e-25	1034 - 1093	100	60 / 60	plus
JLOC1	JLOC1_31357.2	2697	8e-25	2498 - 2557	100	60 / 60	minus
JLOC1	JLOC1_31357.1	2751	8e-25	2552 - 2611	100	60 / 60	minus
Harvest21	ABC16333	644	3e-25	573 - 632	100	60 / 60	plus
Harvest35	U35_7731	644	3e-25	573 - 632	100	60 / 60	plus

Contig Sequence (644 bp)

>U35_7731 644 Hv_44K_v2
TATGAATGTGTCCGACGCATACAGATATTTTGTGTTGAGAGCCCAAAAGATAGCAATATC
ACATGGATACGATGTCATTAACTGGGAAGAAACGTTTAACAACTTCGGAGATAAGTTGGA
CCGTAAAACCGTGGTGCATAACTGGCTTGGGGGTGATGTAGCACCAAAAGTGGTTGCTGC
AGGGCTGAGATGCATAGTAAGCAACCAGGATAAGTGGTACCTAGATCACTTGGATGCCAC
ATGGGAAGGATTTTACCTGAATGAACCCCTGAAAGGAATCAACGACCCAGAACAGCAACG
GTTGGTTATTGGTGGTGAGGTTTGCATGTGGGGAGAGCAAATTGATGCATCAGATATTGA
ACAAACTATTTGGCCACGCGCTGCAGCAGCTGCAGAGAGACTGTGGAGTCCACGTGAGCA
GATTGCTGATGACACCAGGTCAGCCACATCAAGACTATCACGCTTCAGGTGTTTGCTGAA
TCAGAGAGGGGTAGCTGCTGCACCATTAGCTGGCAATGGTCGTACAGCACCATATGAACC
TGGTCCCTGTGTAAGGCAATAGGATATTCATAGCAAAATTTGAAGTAGCATTCAAAGAGG
ATACACATCATTTCACAAGTGTTAGTTCAGCATTATGAATCTGA

Homology of Contig U35_7731 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g66700.1	527	9e-122	protein\|beta-hexosaminidase precursor, putative, expressed
Brachypodium v1_2	Bradi2g57420.1	522	1e-123
Arabidopsis v10	AT1G65590.1	535	5e-93	\| Symbols: HEXO3, ATHEX1 \| beta-hexosaminidase 3 \| chr1:24385996-24390989 FORWARD LENGTH=535