barSeed - Barley Seed Development Database

Probe CUST_5841_PI390587928

Source Contig U35_7733

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5841_PI390587928	Hv_44K_v2	CTCTGTCTGTTTGTGTGTATATACCGATAGTATTAATTAGGACAAAACATTTGTGGGATC	890	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.063	5.116	1.552	0.823	0.210	0.287
Raw	109.466	456.316	105.036	92.829	8.106	12.154

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369321	2527	2e-24	898 - 957	100	60 / 60	plus	None
MLOC	MLOC_12952.1	4500	2e-24	549 - 608	100	60 / 60	plus	None
JLOC1	JLOC1_8731.1	1058	8e-25	523 - 582	100	60 / 60	plus
Harvest35	U35_7733	985	3e-25	891 - 950	100	60 / 60	plus

Contig Sequence (985 bp)

>U35_7733 985 Hv_44K_v2
CGACTTCTTCCTCCCCTCGCCTCCCCCCCAGCGATCTCCCCCTCTCCCATGGCGGCGTCG
ACTTCGCGCGACCGCGGCGGCCACCCGCCGGACTCGACGCGGCTGCGCATCGGCGACGAC
ATCGCCTGGGCGGACGTTGGCGGCGTGTACGACCGCGACGACTCCCTCAAGGAGAACACC
AACCCCAAGTGCCTCCTCAAGGCCCACAACCCGAGCGCGCCCGGCCAGCACCACCACCAC
AACGGCGGCGCGTCGCAGCGCTTCTCCGGGAACCTCAAGCCCACAGCGGCGCCCATCATC
GGCCTCTCCGGGAAGCTCGGACAGGGCGGCGCGCGCCGGACCCACCAGCAGCACCCGCCG
GCCATGTTCCCCAAGAAGGCCAAGACCGGCGGCGGCGGCCGCAACCCGAGGCCCGCCGTC
CCGGAGGACGAGCCCAGCTCCCCCAAGGTCTCGTGTATCGGCAAGGTGCTCTCCGAGCGC
GAGAGGGCGCGGCGCCGACCTCGCCCGCCCCCCTCGGAGCGCCCTTCCTCCGGCTGCTGC
CCTGGGCTCGGCTTCTTCATGCGCCGCAGCCGCTCGCGGAAGAGCGCCGTCGAGAGCGTC
GACTGGTCCCCGCCTCCCGAGCCACCGGCGGCGACGCGCAGGGCGGCGAAGGCGGTCGAG
GCGGAGGAATCCGCGCCGGCGCCGGCGCCCGGGCTGGGAGGGGTCATGCGGTTCGCGTCG
GGGAGGCGGGCGCCGGATTGGGCGGCCAAGATGGAGGTGGACGACCGCGTGGCCAGATCC
GGGCCGTTGTAGCGCGGGCAGGAGATTTAATTTTGCTCTTGGGTTTGGTTGTGATCATCA
CTTCTCCTCGTTCTTGTTGGCTTGTTGCTGTGCTCTAGGCTTAGTAAAATCTCTGTCTGT
TTGTGTGTATATACCGATAGTATTAATTAGGACAAAACATTTGTGGGATCATGATATGGA
TTTGAAATCAGACCAAATTTTGCTA

Homology of Contig U35_7733 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g05530.1	242	2e-89	protein\|expressed protein
Brachypodium v1_2	Bradi4g25560.1	248	1e-76
Arabidopsis v10	None