barSeed - Barley Seed Development Database

Probe CUST_583_PI390587928

Source Contig U35_14090

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_583_PI390587928	Hv_44K_v2	TAATATGCTAATGTTGGTTATCTTGCAGATGAGCTCATCAAGAACGCTGCCTACATTGGC	784	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.359	0.359	1.660	1.795	1.165	1.080
Raw	57.169	88.631	370.407	614.999	145.606	147.870

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC00417	1756	3e-25	785 - 844	100	60 / 60	plus	ABC00417
Harvest35	U35_14090	1756	3e-25	785 - 844	100	60 / 60	plus

Contig Sequence (1756 bp)

>U35_14090 1756 Hv_44K_v2
GCCCTCGTCCTTCTCTCGATATGCCTGCCTGCCTGCTTCGTGTGTGGATAGATCTGTTAC
CTGTTTCGCTCCTCTGCATGCTTAGATCTGCCCATGCCCGCCACTCGGTGCCGTGGTTTG
TGTTAGATCCGTACTCGCGGATCGGACCCGTAAGCGCTGCGTTTGTGTCCGCTTGGTTCC
TAGCAGTTGGATCGCTCTAGGCGCTCGCAGTTGGATCGGGTGCTTAGGGGTCGTCAGTCG
CGTCTGATGATGCGTGGCATGCTGGTAATTCTGCATGGTGCTGCTGCCGTCATGTGCATG
CTAGTGATTATTTTCTGCGAATGATGGTACTGCCGTTCCTTCATTTTCAAGTACCTTGTG
GTTAAGTTGGTATGAACGTCTGCGCATGTTTCTGTTGGGTTCGTGGTAGTGGTAATTCCT
GTTTTAGTTATTGAAGATTGCATCTGTAAATCTAGATCTGTGTAGGTCCTAGGGGCATCT
TTTGTTAAGGAGAATATACCGTTCTTATATACATGCAATCTGTATGTTTTTCTCTCCTGT
GATGTTAATTCTTTACTACACATGCCCTCCAGGCCTCCACCTTGTCCTGTAGCACACGTG
GATTTTTTAGAACTTGTCAGAGTTTCCTAGTCATTTGTTAGAATTAGAAGTAAATTTACA
CTGCTTTTACACTCGCTACTAAACGTGGTGAATGGTTGCACTCAACTTGCATTTCTGTAG
ATTTGAGCACACAGCTTCTAAGATCTGATAGTTATGGACGATCTGATAGTTATGGAATTG
ATTGTAATATGCTAATGTTGGTTATCTTGCAGATGAGCTCATCAAGAACGCTGCCTACAT
TGGCACCCCTGGAAAGGGTATCCTTGCTGCTGACGAGTCCACCGGCACCATCGGCAAGCG
CTTCGCCAGCATCAATGTTGAGAACGTCGAGGACAACCGCCGTGCCCTCCGTGAGCTCCT
CTTCTGCACCCCTGGTGCCCTCCAGTACCTCAGCGGTGTGATCCTCTTCGAGGAGACCCT
CTACCAGAGCACCAAGGGTGGCAAGCCCTTCGTCGACATCCTCAAGGAGGGCAACGTCCT
CCCCGGCATCAAGGTGGACAAGGGTACCATCGAGCTCGCTGGAACCAATGGTGAGACCAC
CACCCAGGGCTTTGATGACCTTGGCAAGCGCTGCGCCAAGTACTACGAGGCTGGTGCCCG
CTTCGCCAAGTGGCGTGCGGTCCTCAAGATCGGTGCCACCGAGCCATCGCAGCTCTCCAT
CGACCATGTCGGCCTACTGCGGAAAGTACAAGGATGAGCTCATCAAGAACGCTGCCTACA
TTGGCACCCCTGGAAAGGGTATCCTTGCTGCTGACGAGTCCACCGGCACCATCGGCAAGC
GCTTCGCCAGCATCAATGTTGAGAACGTCGAGGACAACCGCCGTGCCCTCCAGCAGAGCA
CCCTCAAGGCCTGGTCCGGCAAGACTGAGAACGAGGAGAAGGCCAGGGCTGCGTTCCTGG
TGAGGTGCAAGGCCAACTTTGAGGCCACCCTCGGCACTTACAAGGGCGACGCCACCCTTG
GCGAGGGCGCCTCCGAGAGCCTTCACGTCAAGGACTACAAGTACTGATTGATCTGCGTTG
GGTTGCTGTGGCCCGTTTGGGCGTCCCGCTTACCAGTATCATTGTTTGGTTTTCAGAGTC
CTGAGATATATCCTTCGGATATCGAACCTCGTTTTTAATAATGCTGAACTTGCTTTCATA
AAAAAAAAAAAAAAAA

Homology of Contig U35_14090 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g33380.1	359	2e-87	protein\|fructose-bisphospate aldolase isozyme, putative, expressed
Brachypodium v1_2	Bradi2g58050.1	359	5e-90
Arabidopsis v10	AT2G36460.1	358	1e-77	Aldolase superfamily protein \| chr2:15296929-15298387 REVERSE LENGTH=358