barSeed - Barley Seed Development Database

Probe CUST_5836_PI390587928

Source Contig U35_7739

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5836_PI390587928	Hv_44K_v2	ATGAAAGAGATGATGTGCTATCATGATATGATACCGTATCATATTAAGGGACTGTTTGGT	549	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.332	1.604	1.065	0.831	0.354	0.393
Raw	899.712	1682.828	989.251	1195.323	181.556	219.064

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_3596.1	1458	8e-25	1326 - 1385	100	60 / 60	plus
Harvest21	ABC17434	612	3e-25	4 - 63	100	60 / 60	minus	ABC17434
Harvest35	U35_7739	612	3e-25	550 - 609	100	60 / 60	plus

Contig Sequence (612 bp)

>U35_7739 612 Hv_44K_v2
TTCACTTCTCATCAAAGCCACCATCTTTAGATGCCCATCTCTTACCAGTGGAGCTTCCAG
AAATTTCCTCTCTGATTGTTAGTCGAGGCATAGAGAAATTAGCATGGGATGCTTCAGGAG
AGCGCCTGGCATTGTCATTCAAAGATGGTAATGAAACATATCAGGGACTTGTTGCTGTCT
ATGACGTGAGAAGATCTCCGCTTGTGTCAGTTTCGCTGGTTGGATTCATCAGAGGACCTG
GAGAGGGCGTGAAGGCACTCGCGTTCGCCTTCCACAACAAATTCAAGCAAGGACCGCTGC
TTTCTGTGTGCTGGAGCAGCGGCTGGTGTTGCACATACCCTCTGATACTCCGCTCCCATT
AAGTATCTGCTGGATACTCGTGTGGCTTTTGGCTCTCCGAGACCTGTTTCTGATTTCCTC
TTTCCAGGCAATATATGTATACTCTTTCGCTGGTCGTAATGGGAGTTTAGCTGGTCATAA
CGGGAGTATCATAGGCGGTATCATGCATGCCACCTAGACCTTATTGATGATGTGGCACAC
AATTAAATGATGAAAGAGATGATGTGCTATCATGATATGATACCGTATCATATTAAGGGA
CTGTTTGGTTTG

Homology of Contig U35_7739 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g03540.1	444	3e-63	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi4g43700.1	442	7e-68
Arabidopsis v10	AT3G56900.1	447	4e-55	Transducin/WD40 repeat-like superfamily protein \| chr3:21066330-21069343 FORWARD LENGTH=447