barSeed - Barley Seed Development Database

Probe CUST_5825_PI390587928

Source Contig U35_7750

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5825_PI390587928	Hv_44K_v2	CATGGGGACGTGAATAATCCCAAATACAAAGGCATGCTATATTGTATTTGAACTTTTCTA	1065	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.902	0.804	0.944	0.887	1.302	1.722
Raw	3.030	5.230	6.566	8.865	4.715	7.033

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62384.1	2213	2e-24	543 - 602	100	60 / 60	plus	None
Harvest21	ABC46489	607	3e-25	504 - 563	100	60 / 60	plus
Harvest35	U35_7750	1169	3e-25	1066 - 1125	100	60 / 60	plus

Contig Sequence (1169 bp)

>U35_7750 1169 Hv_44K_v2
GGATCGTCGGCGGCGACGTGCACTACTTCCGCATCGTCCCCCAGTACTGGAAAGATCGCC
TTTTAAGGGCTAAGGCACTAGGTCTGAACACAATTCAAACATATGTTCCTTGGAATTTGC
ACGAGCCAGAACCACAGAGCTGGGAATTCAAGGGTTTCGCTGACATTGAATCGTACCTAA
GGCTTGCTCAAGAATTAGAAATGCTCGTCATGCTTCGTGTAGGTCCATATATTTGTGGAG
AATGGGATTTAGGGGGATTTCCACCATGGTTGCTCACCATAGAGCCAACCCTTAAACTGC
GATCATCAGACTCAACCTATCTTTCCTTGGTGGAGAGATGGTGGAGAGTCTTGCTCCCAA
AAATAGCACCACTGTTATACGAGAATGGAGGTCCAATTATCATGGTGCAGATTGAAAATG
AATTTGGTTCATTTGGAGATGACAAGAATTACCTTCATTACCTTGTTCAATTGGCCAGAC
AATATCTGGGGAATGACATTGTTCTGTATACTACTGATGGGGGCACTACTAATACCTTAA
AGAATGGAGCAATTCTTCAAGATGATGTCTTTGCAGCTGTTGATTTTTCTACTGGTGATG
ATCCATGGCCAATATTCAGATTACAGAAGAAATACAACTTACCGGGAAAATCAGCCCCTT
TAAGTGCGGAATTTTATACCGGATGGCTAACACACTGGGGTGAGAGTATCGCAACCACAG
CTGCCAGCAGCACAGCTAAAGCTCTTAAAAGTATTCTATGCCGCAATGGTTCTGCTGTAC
TCTATGTCCGTAACGGGAGCCCTTCTATCACAACATTTTATTTACATTTTAGTTTTACTA
ATTCTGTTTTTCATGAGATCTGTGTCCAGATGGCTCATGGAGGGACGAATTTTGGGTTTT
ACAATGGAGCAAATACTGGCCAAAATGAATTCGAGTACAAAGCAGACCTCACATCTTATG
ATTATGCAAGTACTTATCCAAATCGGTTCTTTCATTCCTAAACCATTTCTGGAGGTATGC
TTATATTTATATGATGTCTTCGACCANGATGCGCCAATTAAGGAGCATGGGGACGTGAAT
AATCCCAAATACAAAGGCATGCTATATTGTATTTGAACTTTTCTATTTGAAGCATGATTG
TTCTATCAAAAGTTCCAGTTTCTCTTTAA

Homology of Contig U35_7750 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g46200.2	589	2e-178	protein\|beta-galactosidase 8 precursor, putative, expressed
Brachypodium v1_2	Bradi2g18440.3	671	0.0
Arabidopsis v10	AT1G72990.1	697	2e-141	\| Symbols: BGAL17 \| beta-galactosidase 17 \| chr1:27457480-27462168 REVERSE LENGTH=697