barSeed - Barley Seed Development Database

Probe CUST_5824_PI390587928

Source Contig U35_7751

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5824_PI390587928	Hv_44K_v2	TTGATGATTCTTGCTGACGGTACCTGGCCACAGATACTTTTTTGTACTATCATCTTTTTT	156	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.831	1.919	1.065	0.740	0.341	0.291
Raw	2369.253	3635.240	1882.093	2019.045	334.427	308.579

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16372.2	284	2e-24	139 - 198	100	60 / 60	plus	ABC15545
MLOC	MLOC_16372.1	344	2e-24	140 - 199	100	60 / 60	plus	ABC15545
JLOC1	JLOC1_11270.1	344	8e-25	140 - 199	100	60 / 60	plus
Harvest21	ABC15545	258	3e-25	43 - 102	100	60 / 60	minus	ABC15545
Harvest35	U35_7751	258	3e-25	157 - 216	100	60 / 60	plus

Contig Sequence (258 bp)

>U35_7751 258 Hv_44K_v2
AAAAAAAGCCCCCCCCCCCCCCCCCATCCCCCTCTCTTGATGACCTACCTGTTTGCAGCC
AATTGTCGTTGAGCTTGGCTATAGGCCCTCGTGTGCACCTATGTACATGTTTAATGCAAG
GGCATGGAATAAGAACCTTTTCCTCTTGTAGACTGTTTGATGATTCTTGCTGACGGTACC
TGGCCACAGATACTTTTTTGTACTATCATCTTTTTTTTTACCGAGGGAATGCTATTCGGT
TAAAAAAAAAAAAAAAAA

Homology of Contig U35_7751 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None