barSeed - Barley Seed Development Database

Probe CUST_5820_PI390587928

Source Contig U35_7755

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5820_PI390587928	Hv_44K_v2	GCAACATATTCATGAATTCTGCATTGGAAAATGATGTCTTTTGAAATCATGCTGGTCCTC	431	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_49333.1	665	2e-24	123 - 182	100	60 / 60	minus	ABC15701 ABC22231 ABC31966
JLOC1	JLOC1_31589.1	662	8e-25	123 - 182	100	60 / 60	minus
Harvest21	ABC15701	815	3e-25	325 - 384	100	60 / 60	minus	ABC15701
Harvest35	U35_7755	815	3e-25	432 - 491	100	60 / 60	plus

Contig Sequence (815 bp)

>U35_7755 815 Hv_44K_v2
GGAATTTCTTGCCATGCAGATGGCCAAGATGGACTTGAATGGGGATGATGAGAAAGTGAA
CATTGAAACCATTTTTTGGAGTGCCATGGATTTGCTTTCAGACGATGACAAAAAGCTTCC
CCAGGATTTAGTGTCAGCTCCTCGGCCGTGCTCCCCTCCTGTGAGGAGAGTCACAGCTAC
CGAAGATGAGAAGGAAAATGCCATGGAATATGGACTGCCTTCGTCGCATGCTCTCAATAC
CGTTTGTTTGATGGGGTTCGCAGCAGTACCACAATACTCACAAAAGAGTACATTGATGCA
TTACCAAATGGCTGGGATGGCGCAGGATCAACAAAGGAATCCTTCTGTGGATTTTTGGAC
TATTGACTTGAGGGACGCTGCATTGGCTCTGGCAACAATCAGTGGAGAGGGCATATCTGA
AGAAGTTTTGAGCAACATATTCATGAATTCTGCATTGGAAAATGATGTCTTTTGAAATCA
TGCTGGTCCTCGGTCATTTCCGACACTTTTGACCTTTGAGCAGCATATGCAGTGGCATAG
AACGATTTGAACAAGCCTGGTAGGTATCCAAAGAACAAGCAATGAAATTGAACCCATTTT
TTGGATGGGGTCAAAGATCTATAGGCTGGGATGACTGTTGTCACTGCCCTATAGATTTGG
GTTGTATCGTTGTGTATTATATTTGCTATGGAGCTATGTATGTATGGATGCTATGGAACT
ATATGTATATATGGATGCTATGGAATTTTGGATGTATGGATGCTATGGAATTTTGATATA
TGGATCATGAAATTTGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_7755 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None