barSeed - Barley Seed Development Database

Probe CUST_5816_PI390587928

Source Contig U35_7759

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5816_PI390587928	Hv_44K_v2	ACATGGAGAGCGAGCAGGCTATATATATATAGCTAGTGCATCAAGTTTAGCTTGTTTCCC	657	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.441	3.097	3.599	2.427	0.912	0.827
Raw	26.513	312.489	286.689	319.040	39.939	39.871

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4115.1	1673	2e-24	1265 - 1324	100	60 / 60	plus	ABC21324
JLOC1	JLOC1_2511.1	1630	8e-25	1260 - 1319	100	60 / 60	plus
Harvest21	ABC21324	1006	3e-25	658 - 717	100	60 / 60	plus	ABC21324
Harvest35	U35_7759	1038	3e-25	658 - 717	100	60 / 60	plus

Contig Sequence (1038 bp)

>U35_7759 1038 Hv_44K_v2
GACAAGGTGTTCAACTTTGTGAAGCTGGAGGAGCTGTACTACGCGGGGAGCCATGGCATG
GATATTAAGGGCCCAACCAAAGTGTCCAACCACAAGGCAAAGGCTGACGAGATTCTGTGC
CAGCCGGCGACTGAGTTCCTGCCTGTCATCCAGGAGGTGTACAAGACGCTGACGGCCAAG
ATGAAGTCCATCCACGGTGCCATGGTGGAGAACAATAAGTTCTGCCTCTCGGTGCATTTT
CGCAACGTGGAGGAGGATAAGTGGGACACTCTGGCCAGGGAGGTGAGGGCGGTGCTGGAC
GGCTACAAGGAACTCTGCCTCACCAAGGGGAGAAAGGTCCTCGAGATCCGGCCCTCCATC
AAGTGGGATAAGGGAAACGCCCTCGAGTTCTTGCTTGAGTCTCTCGGCTATGAGGGGCGT
AGCGACGTTTTCCCGATATACATCGGAGATGACCGCACAGACGAGGATGCATTCAAGGTG
CTGCGCAACATTGGACAAGGCATCGGGATCCTTGTGACCAAGTCTCCAAAGGAGACCAGC
GCATCGTACTCTCTGCGTGAGCCTGCTGAGGTAAAGGAATTTCTGCGCAAGCTGGTGAAG
AGCAACGGGACGAAGAAGGATTAATTCATTGATCAACTGCCTTCTAGCTCTAACTCAACA
TGGAGAGCGAGCAGGCTATATATATATAGCTAGTGCATCAAGTTTAGCTTGTTTCCCTTT
TGGACCCGGTGTTGTCTTTCAGTTTATTAGAACAATGCATGCATGCGTGTTGGGATCGAT
ATATAAGATCGATCCAGATCGAGCAGTGACCCCTGCCCTGCTAGGCCTTGGCTCCGAAGG
TTTCTATTACTGCATCCTTCTCGCAAGGTCTTGTAATTAGCCTTCCCTTAGCTATGGGAG
TGACAAAGTAGCCCTCCCTTTTCTCACCCTGCATTGTAAAACTGTTGTTCTTCGTTAGCT
TGTGATGATGTGATCTCTGTTGACAAGTTAAGATATTGTTATGTTATGCTAGATTGCTAG
TAAAAAAAAAAAAAAAAA

Homology of Contig U35_7759 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g43160.1	367	3e-97	protein\|uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed
Brachypodium v1_2	Bradi1g21420.1	354	3e-109
Arabidopsis v10	AT2G22190.1	354	1e-90	\| Symbols: TPPE \| Haloacid dehalogenase-like hydrolase (HAD) superfamily protein \| chr2:9433897-9436482 REVERSE LENGTH=354