barSeed - Barley Seed Development Database

Probe CUST_5812_PI390587928

Source Contig U35_7763

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5812_PI390587928	Hv_44K_v2	CAACTTAAGAAGATAAATAGTCTACAGACTGATGGTAATTCTTGGACTACGGGGACAGCA	732	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.690	0.756	2.325	1.670	0.986	0.905
Raw	11.909	19.995	55.164	59.254	12.941	12.946

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252087.1	2479	3e-21	907 - 966	97	58 / 60	plus	ABC44926
MLOC	MLOC_62586.1	5497	3e-21	1206 - 1265	97	58 / 60	plus	ABC44926
JLOC1	JLOC1_40967.1	3420	2e-21	1182 - 1241	97	58 / 60	plus
Harvest35	U35_7763	795	3e-25	733 - 792	100	60 / 60	plus

Contig Sequence (795 bp)

>U35_7763 795 Hv_44K_v2
GGGAGGAGGAGGAGGGGCGGCGGAATGCCGGGCGCGGCCTCGCTGCCGCTGCTGCTCCTG
GCCGCCTGCTGCTGCTGCGTCTGGCCCCGGACGCAAATCTTGGTCGCCGCCACCACCGAC
GCCACTGACCTTACTGCCCTCAACACGCTCTTCACTAGCTTGAATTCTCCGGGGCAGCTC
AAAGGCTGGCAAGTGAATGGTGGTGACCCTTGCGGCGAATCATGGCAGGGCATCACTTGC
TCAGGATCGTCGGTTACAGCAATCAAATTACCAAGCTTGGGCCTGTCCGGGAATTTGGGC
TACAATATGAATACCATGAGTTCATTGGTCGAGCTTGATATGAGCCAGAACAGCCTTGGT
GGTGGACAAGCGATACAATATAATCTCCCCACAGCTAAGCTTGAGAGGCTCAATCTTGCA
GGAAACCAGTTTGGTGGAGAGTTGCCCTACTCGATTTTCTCGATGAATAATCTTAAGTAT
TTAAATATTAACCATAACCAGTTACAAGGAAAAATGACCGACGTATTTTCCAACCTTGGC
AGCTTGACAACAGTGGATCTCTCCTTTAATTCTCTTACTGGTGACCTACCAGAAGGTTTA
AGTTCACTGTCAAGTGTTAAAACTCTATATTTGCAGAACAATCAGTTGACCGGTTCTATC
AATGTCCTAGCCAATCTTCCCCTTTCTGATCTGAATGTTGCAAATAATCGCTTCACTGGT
TGGATTCCTAGTCAACTTAAGAAGATAAATAGTCTACAGACTGATGGTAATTCTTGGACT
ACGGGGACAGCACCA

Homology of Contig U35_7763 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g08550.1	719	1e-125	protein\|STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed
Brachypodium v1_2	Bradi1g72430.3	534	9e-133
Arabidopsis v10	AT3G14350.1	717	3e-74	\| Symbols: SRF7 \| STRUBBELIG-receptor family 7 \| chr3:4783115-4786999 REVERSE LENGTH=717