barSeed - Barley Seed Development Database

Probe CUST_5811_PI390587928

Source Contig U35_7764

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5811_PI390587928	Hv_44K_v2	TTATCATGTTGGCATACATGGGCCATTTGGATCGCGGTTGGTCAATACCAGTCTGCTTAA	569	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.701	1.227	1.422	1.544	0.369	0.422
Raw	15.772	40.803	42.520	74.064	5.169	7.223

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358166	1400	2e-24	579 - 638	100	60 / 60	plus	ABC44448
MLOC	MLOC_47254.1	1019	2e-24	365 - 424	100	60 / 60	plus	ABC44448
MLOC	MLOC_47254.2	1180	2e-24	361 - 420	100	60 / 60	plus	ABC44448
JLOC1	JLOC1_30499.1	1262	8e-25	422 - 481	100	60 / 60	plus
Harvest21	ABC16072	671	3e-25	570 - 629	100	60 / 60	plus
Harvest35	U35_7764	672	3e-25	570 - 629	100	60 / 60	plus

Contig Sequence (672 bp)

>U35_7764 672 Hv_44K_v2
GTGTCTGGCACGGGCAGTGAGATGGCACTGCCGGTGAGCTCGGCCGGCCTCCTCTCGCTC
CTCGTCCCCTGCCTCCTCGCCTTCGTCCTCCTCCGCTTCTCCGCCCTGCTGGACCCCGGC
GCCGCCGTGCCCCGCGTCAAGCGGTCCCCTCCCCTGCCCCTCCGCTTCCGCCATGACGGC
GCCTTCAAGATCCTCCAGGTGGCGGACATGCACTTCGGCAACGGCGCCGCCACGCGCTGC
CGGGACGTGGCGCCGGAGGTCGGCGGCGCGCGCTGCTCCGACCTCAACACCACCCGGTTC
CTGCGCCGGCTCATCGAAGCGGAGAGGCCCGACCTCATAGCCTTCACCGGGGATAACATA
TTTGGGGGCAGTGCAACTGATGCAGCAGAATCACTACTCAGAGCAGTTAGCCCCGCTATA
GAGTACAAGGTTCCATGGGCTGCTATATTGGGAAATCATGACCAGGAATCCACAATGACA
CGAGAGGAACTGATGATGTTCTTGTCTTTGATGGATTACTCAGTATCTCAAGTAAACCCT
CCTGGTTTTCTGGTACATGGGTTTGGTAATTATCATGTTGGCATACATGGGCCATTTGGA
TCGCGGTTGGTCAATACCAGTCTGCTTAACCTTTACTTCCTGGATAGTGGGGATCGTGAA
GTGGTGGATGGA

Homology of Contig U35_7764 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g48570.1	382	1e-121	protein\|Ser/Thr protein phosphatase family protein, putative, expressed
Brachypodium v1_2	Bradi1g33990.1	386	1e-126
Arabidopsis v10	AT5G57140.1	397	3e-79	\| Symbols: ATPAP28, PAP28 \| purple acid phosphatase 28 \| chr5:23149926-23151370 FORWARD LENGTH=397