- Probe CUST_5810_PI390587928
- Source Contig U35_7765
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_5810_PI390587928 | Hv_44K_v2 | CAAATTTTGTTTCTCCTCAATCTTGAGTATGCCTTGTTCTACGGAGCTTGGTCGTTGTTG | 499 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.888 | 1.951 | 1.212 | 0.730 | 0.332 | 0.459 |
| Raw | 1912.783 | 3024.220 | 1694.027 | 1565.056 | 257.276 | 385.550 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK375730 | 1349 | 2e-24 | 1243 - 1302 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_37993.3 | 809 | 2e-24 | 657 - 716 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_37993.1 | 1459 | 2e-24 | 1037 - 1096 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_37993.5 | 528 | 2e-24 | 355 - 414 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_37993.4 | 870 | 2e-24 | 786 - 845 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_24654.1 | 1409 | 8e-25 | 1046 - 1105 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC22537 | 574 | 3e-25 | 450 - 509 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_7765 | 646 | 3e-25 | 500 - 559 | 100 | 60 / 60 | plus |
Contig Sequence (646 bp)
>U35_7765 646 Hv_44K_v2 TTTTTAAAATCTCAGGATGGGTCTTTCTGTAGAATTGGGGAGGCAACGTCACAGCAGGAT ATATCTCGTGCAAGGCTCTGGTTCTTTGAGGGCCAGAAGAAAATCTTGCTTTATAGCGAG AGATCTCACTTCTTCCATAGATACAAGATCAGGGGAGGACATCATTTGGTTATATACTCA TTGCCAGGGAGAAAGGATTTCTATCCAGAGCTTGTGAATATGCTCGGTGAATCAGCAAAT CCCAGGTGCAATGTGCTTTTTTCTCGACTGGACCTCCTTAAGCTGGAGCGGATCGTCGGA ACGTCGTCTGCGCGGAGGCTGATTTCTTCCGACAAGGATATGTTTGTCTTCTGCTGACCG TGTGCATTGAGCGTAAGACGGCCTAGCCGACCTGAATTTTGGAACATGAGCTGAAAATCC GCTGTTGACTAGTCGAGTTGAAAGTTTTTGTGCCTGAAGTTGCAGTAGCAGATTGTACCT TGTAGAGGATTAATGTTTCCAAATTTTGTTTCTCCTCAATCTTGAGTATGCCTTGTTCTA CGGAGCTTGGTCGTTGTTGCGCCAAACGCCACCAGTTATGTGCGCCCCCTCAGATTTTTT TGGTACAGCTTCAGGTATTTTGGGAAAACAAAAAAAAAAAAAAAAA
Homology of Contig U35_7765 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g22920.2 | 571 | 2e-61 | protein|digestive organ expansion factor, putative, expressed |
| Brachypodium v1_2 | Bradi2g05445.2 | 568 | 2e-71 | |
| Arabidopsis v10 | None |