- Probe CUST_580_PI390587928
- Source Contig U35_14093
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_580_PI390587928 | Hv_44K_v2 | CGTGTAATGTACTACTGTACCTAGTTTCTTGTTTAATGACGATACCCTAGCTAGTTGGAA | 692 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.574 | 1.274 | 1.189 | 0.852 | 0.301 | 0.285 |
| Raw | 43602.233 | 53983.900 | 45309.033 | 49147.800 | 6351.033 | 6550.427 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK360584 | 2947 | 2e-24 | 2618 - 2677 | 100 | 60 / 60 | plus | ABC00071 ABC00091 ABC00416 ABC00568 |
| MLOC | MLOC_75180.2 | 4477 | 2e-24 | 2227 - 2286 | 100 | 60 / 60 | plus | ABC00071 ABC00091 ABC00416 ABC00568 ABC24078 |
| MLOC | MLOC_75180.1 | 3172 | 2e-24 | 2227 - 2286 | 100 | 60 / 60 | plus | ABC00071 ABC00091 ABC00416 ABC00568 |
| MLOC | MLOC_75180.3 | 4541 | 2e-24 | 2227 - 2286 | 100 | 60 / 60 | plus | ABC00071 ABC00091 ABC00416 ABC00568 ABC24078 |
| JLOC1 | JLOC1_50142.3 | 2909 | 8e-25 | 2537 - 2596 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50142.2 | 3014 | 8e-25 | 2642 - 2701 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC31031 | 351 | 3e-25 | 148 - 207 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00630 | 531 | 3e-25 | 16 - 75 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC00568 | 329 | 3e-25 | 42 - 101 | 100 | 60 / 60 | minus | ABC00568 |
| Harvest21 | ABC00091 | 2929 | 3e-25 | 2618 - 2677 | 100 | 60 / 60 | plus | ABC00091 |
| Harvest21 | ABC00416 | 1053 | 1e-23 | 145 - 204 | 98 | 59 / 60 | minus | ABC00416 |
| Harvest21 | ABC00071 | 629 | 1e-23 | 23 - 82 | 98 | 59 / 60 | minus | ABC00071 |
| Harvest35 | U35_38631 | 644 | 3e-25 | 20 - 79 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_14103 | 2968 | 3e-25 | 2586 - 2645 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14098 | 2837 | 3e-25 | 2638 - 2697 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14093 | 767 | 3e-25 | 693 - 752 | 100 | 60 / 60 | plus |
Contig Sequence (767 bp)
>U35_14093 767 Hv_44K_v2 GCCGATACCAAAGCTCATCTTCTTCTCCTTGAAATCTTTTCGGGTTCACCAGATCTGAAG GATGTCTTGCAACTGTGGATCCGGCTGCAGCTGCGGCTCAGACTGCAAGTGCAACCCCTG CAACTGTTAAAGCTGCTACGTAAGTGTGATGGTGTGAGAGTATACGTGAATAACGAGCGT CTGATGATCTGATGGAGTCGGGCAAGGGTGCGTGTGCGTGCGCGTGTGCGTGTGGTGTGG TTTACTTGCTCGCTCTCCGCCTATGCTCTGCCCTTGGTGTCGTGTGTATGTATGTGCTTG TGTCTCGGTAATTGCTCCATTGTCTCCACTACGATGGAGTCATGAATATATAAGATTGAA AGGTTTACCTAAAAAAAAAAAAAAAAAAACTCGAACCGAGCATCTACCGGTCGGTGCAGA AGAGCCTGGACCTGAGCCCCGACGCTGCCGTGGAGGAGGAAGAGGAGGTGGAGGAGCCAG AGGTGGAGGAGAAGGAGTCGGCCAAGCAGGAGGCGGAGGAGCCGGAACACGAGCAGTACG ACAAGGACGAGCTGTAGTTGCTCATATCGCCCATTTAGCTTTCATTTCATTAGAAAGAAA TGTTGGACTGGAAATGTGATGGTTTTGAGGGACGTCCATTTTTACCGCGCGGAAGACGAT TAATCATCGATCGTGATACGGGGGGTTTTGTCCGTGTAATGTACTACTGTACCTAGTTTC TTGTTTAATGACGATACCCTAGCTAGTTGGAATTAAAAAAAAAAAAA
Homology of Contig U35_14093 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |