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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_5807_PI390587928Hv_44K_v2TCCCCAGTCGATATTGGAGGACTAAAACCCTGGAATGATTTAATATTTTTGGAGAACACT751GeneList: None
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.0520.0390.8401.7661.3321.316
Raw 62.03681.9551452.9124703.5771264.1021335.071



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_64240.213222e-241235 - 129410060 / 60plus ABC33524
MLOCMLOC_64240.39293e-21876 - 92910054 / 54plus ABC33524
JLOC1JLOC1_42163.114118e-251291 - 135010060 / 60plus
JLOC1JLOC1_42163.39643e-24906 - 96410059 / 59plus
Harvest21ABC335245823e-25506 - 56510060 / 60plusABC33524
Harvest35U35_77688283e-25752 - 81110060 / 60plus



Contig Sequence (828 bp)

>U35_7768 828 Hv_44K_v2
GTGGGATGAGGAAGACGTTGTGTTCTACCAAGGGAGGGCCCCTAAGGGGAGGAAGACGGA
GTGGGTGATGCACGAATACAGGTTGGAGGGAGCACATGAGCAAGCCTCCAAGGAGGACTG
GGTCCTGTGCAGAGTCATATGCAAGAAGAAATCAGGAGTTGGTGCCACCCCCAGGCCAAG
GAACCTCACCAACATTGTCCATGGCACATCCACAGACACCTCCTCACCGCCACTGCCACC
ACTCATGGACACCACCCTGGCACAGCTCCATGCCACCATGAACACCTCCGCCGCCGCCAC
GGCCGCACTTGAGCAAGTGCCCTGCTTCTCCAGCTTCAGTAATAACAGTGCCAGCAACAG
CAGCTACCTCCCCATGGTGACAGGCAACGGTAATGGCATGAGCTACCTGGACCATGGCCT
GCCTGACTTTGGGAGCTACCTAGACCCCTCCATGAACTGCGACAAGAAGGTTCTCAAGGC
AGTGCTGAGCCAGCTGAGCTCCATGGGTGGTGAGGTGGTGCCGAGCATGTCTGCTCAGAT
GGCTGCTGCAGTGAGCTCTACTTGGAACCACTTCTAGGCAAATTTGTTTATTTATCCAGA
CAACATAAGCAGATAACTGGCTAGCTAGTAGTTAATCTGCGGTGTGTGTATGATGATTTC
ATATCAGAATGTATAATTATGTCTGTTTGGTGCAATGTTTCTTGAGTGTGTGGGTATTAG
ACTATTAGTAGAGAAACGGTGATTTTTTGTTTCCCCAGTCGATATTGGAGGACTAAAACC
CTGGAATGATTTAATATTTTTGGAGAACACTAAAAAAAAAAAAAAAAA



Homology of Contig U35_7768 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2Bradi4g02060.13151e-59
Arabidopsis v10None