barSeed - Barley Seed Development Database

Probe CUST_5800_PI390587928

Source Contig U35_7775

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5800_PI390587928	Hv_44K_v2	CTGCTCTTGGATGTGTCTTTAAGCTAGTTGAGATCAACAGTAGACCTCGTATCAAACTTT	1146	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370915	2080	2e-24	1384 - 1443	100	60 / 60	plus	ABC13809
MLOC	MLOC_37970.1	1616	2e-24	946 - 1005	100	60 / 60	plus	ABC13809
MLOC	MLOC_37970.3	816	2e-24	292 - 351	100	60 / 60	plus	ABC13809
MLOC	MLOC_37970.2	1760	2e-24	934 - 993	100	60 / 60	plus	ABC13809
JLOC1	JLOC1_24640.1	1794	8e-25	782 - 841	100	60 / 60	plus
Harvest21	ABC16513	1206	3e-25	1147 - 1206	100	60 / 60	plus
Harvest35	U35_7775	1206	3e-25	1147 - 1206	100	60 / 60	plus

Contig Sequence (1206 bp)

>U35_7775 1206 Hv_44K_v2
GCCACGAACCCCATGGCCACGCGCTGCTCACCGATCAGTACCAGTTCTCCATGGCCTACG
CCTACTGGAAGGCCGGCAAGCACGCCGACCACGCCGTGTTTGACCTGTACTTTAGGAAAA
ATCCATTTGGTGGAGAGTTTACTGTTTTTGCCGGTCTTGAGGAATGTATAAAATTCATTG
CAAACTTTAAGTTCACAGAAGATGAGATTTCTTTCCTGCAGTCAGTCATGCCAATGTGTG
AGGATTCATTCTTTGATTATCTCCGTGGAATTGATTGCTCTGATGTTGAAGTGTACTCCA
TTCCTGAGGGCTCGGTAGTCTTTCCAAAAGTGCCCTTGATGAGAGTCGAGGGTCCTGTTG
CTGTGGTTCAACTACTTGAGACTCCATTTGTAAATCTGATCAACTATGCCTCTTTGGTAA
CCACCAATGCTGCACGGCACCGTCATGTTGCTGGAAAGTCAAAGGTTCTAATGGAATTTG
GTTTAAGACGAGCACAGGGGCCTGATGGCGCAATAAGTGCTTCAAAGTATTGTTTCATGG
GAGGCTTTGATGCAACCAGTAATGTATTGGCAGGACATCTATTTGGCATACCACTCCGTG
GAACACATTCTCATGCTTATGTCAGCTCATATATGAGCCTTGATGAGATCCCAGACAGGA
CCCTAAGGAACAAAGATGGTTCAAAAATCTGCAAGGATTTTGTTAGTTTAGTGAAAGAAT
GGCTTTGCAAGATTCAGGTAGCAGATTCATTACGTAATGTATTTGGCGATACAAATCAAA
GTGAGCTTGCTGCATTTGCATCATATGCGTTGGCTTTTCCAAGCAGCTTTCTAGCACTGG
TGGACACATATGATGTTATGCGAAGTGGGATTCCAAATTTCTGTGCGGTAGCTCTAGCAC
TCCATGACTTAGGGTACAAGGCATCTGGTATCAGATTAGACTCTGGTGATCTAGCCTATC
TGTCAATTGAAACCCGAAAAGTTTTTCATGCAATAGAAAAGGAATTCAATATACCTGGCT
TCGGGAAGATGATCATTACTGCTAGCAATGACCTGAATGAGGAAACAATTGATGCTCTGA
ACAAGCAGGGTCATGAAGTTGATGCCTTTGGAATCGGAACTTATCTTGTAACGTGTTATT
CCCAAGCTGCTCTTGGATGTGTCTTTAAGCTAGTTGAGATCAACAGTAGACCTCGTATCA
AACTTT

Homology of Contig U35_7775 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g35060.1	564	protein\|nicotinate phosphoribosyltransferase family domain containing protein, expressed
Brachypodium v1_2	Bradi5g10140.2	568
Arabidopsis v10	AT2G23420.1	557	\| Symbols: NAPRT2 \| nicotinate phosphoribosyltransferase 2 \| chr2:9971819-9974909 FORWARD LENGTH=557