barSeed - Barley Seed Development Database

Probe CUST_57_PI415269222

Source Contig TA33411_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_57_PI415269222	Hv_44K_v2	CATGCAGTCTGTGTGTGTTAGATTGAAAGACTGGACGAACCGTGTTGAAAATAACCGTGC	1050	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.120	1.627	1.638	1.376	0.587	0.560
Raw	1546.563	3629.407	3119.673	4147.667	612.021	638.596

Probe Sequence's BLAST hits in Barley Unigene Datasets

This probe has no hits to the blast databases

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence

Contig Sequence (1177 bp)

>TA33411_4513 1177 Hv_44K_v2
CGGCACGAGGTCCATCCCCTTCTAAAATCTACACTCTCCCATCTCCAGTCCACTCTCCAC
CCACCACCACCACCACTCCCCCACACCCCGCCGGCGATCGCGCGATGGCGGCGGCCGCAC
CCCCTCCCGCGGCGGCGCTGGAGCAGCTGAGCAAGACCAAGATGTTCGGCGGCCACAACC
TCCGCTTCCGCCACCAGAGCGCCGCCCTCGGCTGCCCCATGACCTTCTCCCTCTTCCTCC
CCGCGTCGCCGGCCTCCAAGCTCCCCGTGCTCTACTGGCTCTCCGGCCTCACCTGCACCG
ACGAGAACTTCATCATCAAGTCCGGCGCCCAGCGCGCCGCCGCGGCACACGGCGTCGCCC
TCGTCGCCCCCGACACCTCCCCGCGTGGACTAAATGTTGAAGGAGAGGCAGATAGTTGGG
ATTTTGGTGTTGGTGCTGGATTTTATTTGAATGCCACAAATGAGAAGTGGAAAAACTGGC
GCATGTACGACTATGTTGTGAAGGAGCTGCCAAAAGTTCTTAGTGACAACTTTGAACAGC
TTAACACGTCATGTGCATCAATTTTTGGCCACTCTATGGGAGGGCATGGTGCACTCACTA
TCTACTTGAAGAACACTGACAAATACAAGTCGGTGTCTGCATTTGCTCCAATTGCTAACC
CAATAAACTGCCCATGGGGCCAGAAAGCATTCTCAAACTATCTGGGCACAACTAAATCAG
AATGGGAGGAATACGATGCAACATTCTTGGTCAAGAAGTGCAACACGGTTTCAACTTCTA
TCCTGATTGACCAGGGAGAGGATGACAAGTTCCTGGCGGAGCAGCTGCTGGCGGGCAACT
TTGAGGAGGCGTGCAAGTCGGCGGGCGTTCCAGTGACCCTCCGCATGCAGCCGGGGTACG
ACCATTCCTTCTTCTTCATCGCCACCTTCATCGACGATCACATCGCGCACCACGCCCAGT
TCCTCAAGAGCGCATGACTTGCCAGTCACATCTAGCGATGTCATCGCTAAAATCTCAGCT
TGCAAATCTGTGTTATCACCCGTATGCGCCCATGCAGTCTGTGTGTGTTAGATTGAAAGA
CTGGACGAACCGTGTTGAAAATAACCGTGCCGAAGCCGCGCCGTGCGTCGCTTGGCTGTT
AAGTTCACGGTCATTTCGGTANAATAGCCGTTGGCCC

Homology of Contig TA33411_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g71300.1	293	3e-174	protein\|S-formylglutathione hydrolase, putative, expressed
Brachypodium v1_2	Bradi2g60400.1	292	9e-180
Arabidopsis v10	AT2G41530.1	284	4e-141	\| Symbols: ATSFGH, SFGH \| S-formylglutathione hydrolase \| chr2:17323656-17325430 REVERSE LENGTH=284