barSeed - Barley Seed Development Database

Probe CUST_5795_PI390587928

Source Contig U35_7780

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5795_PI390587928	Hv_44K_v2	GCTCGTAATAATACCGAAAGACCGGACCATGAAATGTTGCTGTTAATTGGGATTAAAAAA	884	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	10.624	6.878	0.882	0.642	0.942	0.903
Raw	78.348	82.592	7.718	9.552	2.995	4.384

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10364.1	1900	3e-21	49 - 102	100	54 / 54	minus	None
JLOC1	JLOC1_6782.1	1875	2e-21	1799 - 1852	100	54 / 54	plus
Harvest35	U35_7780	955	3e-25	885 - 944	100	60 / 60	plus

Contig Sequence (955 bp)

>U35_7780 955 Hv_44K_v2
GCGATGATGGCCACCGGGGCGGCGCCCGCCACCGATGTTGGTGCAGCCAAGGCCGCCGCG
GCGGGTGAAGCCGCCGTGACCGTGCACCCACCGAAGGTGAAGAAGGAGAAGAGAGCTGCC
GACGTTGACCGGTCCCTGCCGTTCAAGAAACGGTGCAAGGTGGTCCAGGATCACACCGCC
ACAAACTCCGCTGCTTCCACCACCGTCGAGGCTGCCGCAGAGCCACCGATCGTCGTCACC
ACCACCACCACCACCACTGATGCTGCGCCGGCGAGGGATCTCGTCGACACCATCGGGGCC
AACTGGAGCAAGAGCCCTACTGCCGCCACAGCCTCCTGCTTCCGGCCACCGCCGGCGCCC
TTCGCGGTGTCAGTGCCGGTGCAGGACGAGATCACGGACGCCGCCATGCTGCTGATGACG
CTATCCTGCGAGCTTGTCCGGAGCTGATCGATCCATGATGGAACACTCGAGAGACTCTGA
TCTATCTACCACGGTACACCCCTGGGCTTTTTTGCCTTAGACCGTTAGACAGTCAGTACG
TACTGTCCGTGCTGCGCCGCGTTTTTGGCTTGTTGTTCTTGTTGCTAGTGTAACCCTGCG
CTACTGTTAAAGTCTTGTGATTCGTTTGTGTGTAAGATTAAGACAGTGAGAAAGAGAGAG
ATCTAGAGAAAGAGAGTAGAAACAAGGAGATCAGAGGAGAGAAGAGGATAAAAATAAAAA
AACAACGTGAGAGCTAGCTAGCTAGGATCTGCAAACACTGTGAGATCGAGTGTGAGTTCA
GTTTGGAGTAGCTAGCTTTTTGTTGGCGCGGCTAACTAAGCCAATGGCTGCTATATAGCA
TATGTATGTTTGTTCTTTGTTTTGCTCCAATCATTTGTACTGTGGCTCGTAATAATACCG
AAAGACCGGACCATGAAATGTTGCTGTTAATTGGGATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_7780 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None