barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_5791_PI390587928Hv_44K_v2ATCCCGTTAGATGTCAATTCTGAACTTGAGTTGTGGAAACGTGTTAACGCTAAATTTAAG764GeneList: yellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.9232.7831.3750.6270.3170.215
Raw 105.687163.36367.18747.3728.0826.287



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest35U35_77848283e-25765 - 82410060 / 60plus



Contig Sequence (828 bp)

>U35_7784 828 Hv_44K_v2
AGAGGCACCACCCCCCAACCCCGCGGGAAAGCGCTCGCCTGCACGCAGCCAGCCTGGGAA
GTACTGTAGCTAGGGCTAGCACCCGCCGCCCCCTCTCCCCAGCGCCGCCGCAGCCGCCAG
CGCCCCATGGCCAAGGGCAAGTTCAAGGGCAAGCCCACCGGGCAGCGCACCTTCTCCTCC
AAGGAGGAGCTCGAGGCTGGTACTTCAGCTGATCGTCCAAAGACCTTTTCTAAGAAGAAG
CAAGAGGTATTTAACAGAAGGGAAGAGTCAATTGAGGAGGAAAGCGATGAAGAGGTTGAG
AAGACCAAACACAAAGGCACTGCAGGTCTCATTGACATTGACAATCCAAACCTGGTGAAA
CCTAAGAGTATTAAAGCCAAGGATGTTGATGTTGATAGGACAGCTGATCTCTCCAGGCGT
GAAAGGGAGGAGCTTGAGAAGCAGAGAGCTCGAGCCCACTACATGAGACTTCAGGAGGAA
GGAAAGACAGAACAGGCTAGGAAAGACTTAGATCGCCTTACCTTGATCCGGCGGCAGAGG
GAGGAAGCTGCAAAGAAGCGCGAAGAGGAAAAGGCTGCGAAAGAGGAGAGGAAGGCTGAA
GCACGCAAGTGACCTACCAAGCTATGGATGGACCGGATATGAGAGATGTGTTTTGTTGGG
AAACTCGATGCCGATATTAGCTGAACTTCCTTTTATTCTTTTATATTTTGCTGTAGTAGT
ATGCAAAATGACCGCAAAACCAGTGTGAATGATGCCTGTGCTTGATCCCGTTAGATGTCA
ATTCTGAACTTGAGTTGTGGAAACGTGTTAACGCTAAATTTAAGAAAA



Homology of Contig U35_7784 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2Bradi2g19810.11633e-63
Arabidopsis v10None