barSeed - Barley Seed Development Database

Probe CUST_5789_PI390587928

Source Contig U35_7786

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5789_PI390587928	Hv_44K_v2	ATATTCCCTATTGATCCAAGGATGCAGCTGTGAAATGAGTAATTTCTTTGTTGGATGAAA	810	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.241	3.268	0.859	0.819	0.209	0.745
Raw	253.070	240.469	57.949	87.999	6.966	29.034

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358994	1433	2e-23	1375 - 1432	100	58 / 58	plus	ABC18689
JLOC1	JLOC1_50701.1	1212	6e-21	1160 - 1212	100	53 / 53	plus
Harvest21	ABC18689	551	3e-25	15 - 74	100	60 / 60	minus	ABC18689
Harvest35	U35_7786	884	3e-25	811 - 870	100	60 / 60	plus

Contig Sequence (884 bp)

>U35_7786 884 Hv_44K_v2
TGAAGGGGCTCGACGTGGGCCTCCTGGTGAACAGCGCCGGCGCGACGTACCCCTGCGCGG
CCTACTTCCACGAGGTGGAGGACCCGGTGTGGGAGGCCGTGGTGCGGGTGAACGTGGAGG
CGGCCACGCGGATCTCGCGCGCCGTCGTGCCAGCCATGGCGGCCAAGGGGAAGGGCGCCA
TCGTCAACGTCGGATCCGGGTCGTCGGTGGTGGTGCCGGCGTTCCCGCTCTACGCCGTGT
ACGCGGCAAGCAAAGCGTATATTGACCAACTATCTCGGAGTCTTAGCGTCGAATACAAAC
ACCACGGAGTGGATGTCCAATGCCAGATTCCTTTGTACGTGGCCACCAAGATGTCACCTG
TTAAGGGTAACTCTCCGTTCATACCATCACCCGAGGAGTACGTCAAAGCTGCCATTCGTT
GCATTGGTTACGAGCCGAGATGTGTACCCTACTGGCGCCACTCTGTCCAGTGGTTCTTGG
CGTCTCTAGCGCCAGACTCTGCTCTCAATCTGTGGCGTCTCCGGGTTGGTATCCGGAAGA
GAAACGAGATGAGAGCCCTGATCGGAGAGAAGGAGCTCAACTGAACAGCCCATGGTCTTT
GTAAGAGGAAACCGTAAAGCATGATGTGATCTGTTTATTTTTTGTGGGAAGTGATTTGGA
CAGTCATCAGCGCCCGTATTTGGTCTACATTTAGGCTTGTTTCGGAAGTTGAGTATTTGG
GTTTTTCTCTCGTATGTAATTAACGTTTGTTCTCTTGTCGATGTTCTTGATTGATGCAAC
AGCGAGCTACGGTGGCTCAGTTACCTCTGTATATTCCCTATTGATCCAAGGATGCAGCTG
TGAAATGAGTAATTTCTTTGTTGGATGAAAAAAAAAAAAAAAAA

Homology of Contig U35_7786 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g24484.1	340	1e-109	protein\|estradiol 17-beta-dehydrogenase 12, putative, expressed
Brachypodium v1_2	Bradi3g30120.1	330	1e-103
Arabidopsis v10	AT1G24470.1	312	2e-61	\| Symbols: KCR2, ATKCR2 \| beta-ketoacyl reductase 2 \| chr1:8674056-8676277 FORWARD LENGTH=312