barSeed - Barley Seed Development Database

Probe CUST_5787_PI390587928

Source Contig U35_7788

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5787_PI390587928	Hv_44K_v2	AGGAGCGACCACCTGTGGGAGAGCCACATGTCCAACAAGTGGGGTTCTGTCCTGGGTACG	456	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372868	2413	2e-24	1250 - 1309	100	60 / 60	plus	ABC13530
MLOC	MLOC_20418.2	1077	2e-24	806 - 865	100	60 / 60	minus	ABC13530
MLOC	MLOC_20418.1	1362	2e-24	1105 - 1164	100	60 / 60	minus	ABC13530
JLOC1	JLOC1_14143.1	1523	8e-25	201 - 260	100	60 / 60	plus
Harvest21	ABC16390	592	3e-25	436 - 495	100	60 / 60	plus
Harvest35	U35_7788	613	3e-25	457 - 516	100	60 / 60	plus

Contig Sequence (613 bp)

>U35_7788 613 Hv_44K_v2
CTGGGTCTGGGTGGCTTGGGGGGGGGGTGGGCGAGGAGCACTGTGCGTGCAGTCGCAGTG
CTCCACGCCTCGCTTCTTTGCCTCTCATCAATGCTTGCCCTGGTCGCCACCTTCGTCTTC
TCCTGCCTCCTCTTCTTGTCCAAGCCATGCGCCCGTGACATGAGACTCTTCCTCGCCTCC
ATCTCCCAACAACTCGCCCTCTCGCTTTTCGGATTCTTGGCCGGCTACAGGCTGCTCGGC
GGCGTCGCCTCCAGGGCCACGCCCGCCGACGCCATGCCCCTCATGCCGTCCTTCAAGAGG
AAGCGACCGGCCGCCAAGGTGGAGAGTACGGATATGACCGGCGAGCCATCGGTGCTCGAC
CTCCCGGAGCTGGCCATCGACTGCATTCTCGCCAAGCTGCCGCCGGCGGAGCTGCGGAAC
ATGGCCGCCGTCAGCCGCTCCATGCGGGAAAGGTGCAGGAGCGACCACCTGTGGGAGAGC
CACATGTCCAACAAGTGGGGTTCTGTCCTGGGTACGGCCGCGAGGGACGAGTGGAGGGCG
TATCTGTCCTCGTCGACCGCGGCCGGCGGCGGCGCGTCGGGGTACTGCGGGTCTGCTGCC
AGCGGCAAGCACC

Homology of Contig U35_7788 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g17390.1	416	8e-56	protein\|OsFBX5 - F-box domain containing protein, expressed
Brachypodium v1_2	Bradi2g10870.1	412	2e-69
Arabidopsis v10	None