barSeed - Barley Seed Development Database

Probe CUST_5782_PI390587928

Source Contig U35_7794

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5782_PI390587928	Hv_44K_v2	AACCTCGATGTACGTTCCACCAAAGAAGAACGTAATATTGTCAAGTGGGGTAGGCCTTTC	670	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354790	2063	2e-24	1270 - 1329	100	60 / 60	plus	ABC24256
MLOC	MLOC_63376.1	2271	2e-24	750 - 809	100	60 / 60	minus	ABC24256
JLOC1	JLOC1_41503.1	2294	8e-25	1388 - 1447	100	60 / 60	plus
Harvest21	ABC15660	825	3e-25	671 - 730	100	60 / 60	plus
Harvest35	U35_7794	825	3e-25	671 - 730	100	60 / 60	plus

Contig Sequence (825 bp)

>U35_7794 825 Hv_44K_v2
AAAGAGGTCCGAGGGGCTTAAGAACTTCTCGTACGATGAGATTTCCACTGCTTGCCAGTG
GTTTTCTGGCGATCATCGTGTCTCAGAAACTCTGACTTCGACATCATACAAGGCATTGTT
CAGGGATGATTTCGTTGAACCAAAGAAGATGGAAGCAATAGTAGCCAGGTTACTCCCTTC
CAATCAGAGTTTCAAAGAATTTAAGGCACAAGTAAATACGTTGGCATCACTTCAACATCC
CAATTTATGTAAACTCATCGGCTATCACGCAAGAGAAGAATCTAATGAAAGGATGTTGGT
CTATGAGCGGCTCCATCATGGCAGTTTAGACAGGTTACTCTTTGGAAGACCGGAAGGTCG
TTTCATGGACTGGTCTACACGTTTGAAGGTTGCCCTTGGTGCTGCTAAAGGTCTAGCTTT
CCTACACGATGAAGGACCCTTTCAGGCAATGTATGATGACTTCTCAACGTCAAACATCCA
AATAGAGAAAGATTTCACTGCAAAGCTGTCGGGATATGGTTGTGTTGGCTTCAATTCTGA
CGAGGAAAGATCCAAGGCATCTGTGGCTGCAAACCTCTCAGAGGAAACCTTGGAGAAAGG
CGTACTGACTCCGAAGAGCAACGTATGGAGCTTTGGAGTTGTCTTGCTCGAGCTAATAAC
AGGACGGAAGAACCTCGATGTACGTTCCACCAAAGAAGAACGTAATATTGTCAAGTGGGG
TAGGCCTTTCCTCACCGACGATAGTCGTCTATCCCTCATCATGGATCCCCGTATAAAAGG
ACGCTTTCCTACCAAGGCTGCTCGAACTGTGGCAGACATAATTCT

Homology of Contig U35_7794 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g60700.1	543	4e-154	protein\|serine/threonine-protein kinase NAK, putative, expressed
Brachypodium v1_2	Bradi2g53550.2	546	1e-160
Arabidopsis v10	AT3G08760.1	557	7e-106	\| Symbols: ATSIK \| Protein kinase superfamily protein \| chr3:2658129-2659984 REVERSE LENGTH=557