barSeed - Barley Seed Development Database

Probe CUST_5780_PI390587928

Source Contig U35_7796

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5780_PI390587928	Hv_44K_v2	TCAAGTGTACCTTAGGTTGTGAAATGGGCTGACACAGAAAAAGAAAGGCAGGCTCGAAAA	734	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.777	1.584	1.114	0.815	0.501	0.407
Raw	90.159	110.042	76.790	86.090	18.993	16.338

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66120.1	1913	7e-23	831 - 890	98	59 / 60	plus	ABC09693 ABC12980
MLOC	MLOC_66120.2	1890	7e-23	828 - 887	98	59 / 60	plus	ABC09693 ABC12980
JLOC1	JLOC1_43559.1	1898	4e-23	796 - 855	98	59 / 60	plus
Harvest21	ABC16180	825	3e-25	735 - 794	100	60 / 60	plus
Harvest35	U35_7796	825	3e-25	735 - 794	100	60 / 60	plus

Contig Sequence (825 bp)

>U35_7796 825 Hv_44K_v2
TATTTATTTACTATTAATTGCCCCGACTCCGTCTCCGTCTCCGTCTCCGTCCCCGTCCCC
GTCCCCGCCTCCTCCACCGTCGCCGCCCAAATTCCCACGCAAACCCTAAGCCACCCAGCT
AGCTCGACGCCCAGCCACGCCCAATGGCGGAAGACGCCGGCGACAGGGAGCAGCAGCAGC
CCGCGGCGGCCGCGTGCGCCGGAGCAGTCGGAGCAGGACACGCCTGCGGGGAGGACGGGG
GCGGCAGGGACGAGAGCTCCGTCAAGCTCTTCGTCGGCCAGGTGCCCAAGCTCATGACGG
AGGCCGAGCTGGCCGCCATGTTCCGCGACGTCGCCATCGTCGACGAGGTCACCGTCATCC
GCGACAAGGCCACCAAGGCGTCCCGAGGCTGCTGCTTCCTGATCTGCCCATCAAGGGAGG
AGGCTGACAAGGCAGTGAATGCATATCACAACAAACGCACACTTCCTGGGGCCCCGAGTC
CATTGCAAGTAAAATATGCCGATGGAGAGTTGGAAAGGCTGGAGCACAAACTTTTCATCG
GAATGCTCCCCAAAAATGTAACAGATGTTGAAATGACTGATTTATTTTCACAATATGGAA
ATATCAAGGACCTGCAGATTTTGAGAGGTTCACAACAGACGAGCAAAGCTGGCTGTGCCT
TTCTGAAGTATGAAACAAAAGAGCAGGCAGTGGCAGCTATCGAAGCTCTAAACGGGAAGC
ACAAAATAGAGGGTTCAAGTGTACCTTAGGTTGTGAAATGGGCTGACACAGAAAAAGAAA
GGCAGGCTCGAAAAGCACAAAAGGCTCAATATCCGCCGTCTAAAT

Homology of Contig U35_7796 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g30980.1	467	4e-119	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi2g27260.1	460	1e-127
Arabidopsis v10	AT4G03110.1	441	2e-94	\| Symbols: AtRBP-DR1, RBP-DR1 \| RNA-binding protein-defense related 1 \| chr4:1376612-1379275 REVERSE LENGTH=441