barSeed - Barley Seed Development Database

Probe CUST_5776_PI390587928

Source Contig U35_12800

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5776_PI390587928	Hv_44K_v2	AAGAGCTTGCTGAATATGATCTTCTGGCAATGTTAAGCTACGTGTATACAGTTAGGCAGT	534	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360330	1570	2e-24	557 - 616	100	60 / 60	plus	None
MLOC	MLOC_36576.3	763	2e-24	329 - 388	100	60 / 60	plus	None
MLOC	MLOC_36576.2	860	2e-24	349 - 408	100	60 / 60	plus	None
MLOC	MLOC_36576.1	801	2e-24	357 - 416	100	60 / 60	plus	None
JLOC1	JLOC1_23570.1	923	8e-25	357 - 416	100	60 / 60	plus
Harvest35	U35_12800	653	3e-25	535 - 594	100	60 / 60	plus

Contig Sequence (653 bp)

>U35_12800 653 Hv_44K_v2
CTGCCAACTGCCCTCGACCCGCCGCTTCCGTCCCCCCGTCCCCCGCCGAGTCCCGACCGA
CGGAGATGGCGGTCCCGGGAGGAGGAGCCGCCGCCGCCGCGCTCGCCCTGACCCTCCTAC
TCCGCTACTGCGTTCCCGGCGGGGCCTACGGCTCCCCGGCGTCCTCCACCCTCCGCCACG
CCGTGCCGCGCGGCGACGCCGGCGGCGGACTCTGCGGGCAGCTGCTCCTACCACTGGGCT
ACCCGTGCACCGAGCACACCGTTGAAACAAACGATGGCTTTCTTCTGTCTCTTCAGCATA
TTCCACATGGCAAAAATGGAGTTGCAGACAATACTGGACCTCCAGTTTTTCTTCAACATG
GTCTTTTTCAGGGAGGAGACACATGGTTCATAAATTCTGCTGAACAGTCGCTTGGATATA
TCCTTGCTGATAATGGTTTCGATGTTTGGATTGGAAATGTTCGTGGAACACGTTGGAGTA
AAGGCCATTCAACTTTCACTGTTCATGATAAGCTTTTCTGGGATTGGAGCTGGCAAGAGC
TTGCTGAATATGATCTTCTGGCAATGTTAAGCTACGTGTATACAGTTAGGCAGTCCANAA
TTTTGTATGTGGGGCATTCACAGGGAACTATTATGGGTTTGGCTGCTTTTACA

Homology of Contig U35_12800 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g01590.1	411	1e-91	protein\|triacylglycerol lipase 1 precursor, putative, expressed
Brachypodium v1_2	Bradi4g08200.1	414	1e-92
Arabidopsis v10	AT2G15230.1	393	4e-55	\| Symbols: ATLIP1, LIP1 \| lipase 1 \| chr2:6612666-6615204 FORWARD LENGTH=393