barSeed - Barley Seed Development Database

Probe CUST_5764_PI390587928

Source Contig U35_8113

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5764_PI390587928	Hv_44K_v2	GCTACCTTCCTTCGGTTGAAGTTGATCTCTATTATTGCTTTGTGCAAATTAATCATTTCA	571	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63492.1	1590	2e-24	1394 - 1453	100	60 / 60	plus	ABC25203
JLOC1	JLOC1_41590.2	1576	8e-25	1330 - 1389	100	60 / 60	plus
JLOC1	JLOC1_41590.1	2010	8e-25	1764 - 1823	100	60 / 60	plus
Harvest35	U35_8113	653	3e-25	572 - 631	100	60 / 60	plus

Contig Sequence (653 bp)

>U35_8113 653 Hv_44K_v2
CTGTGGGAAGAATACGAAAATAACTCCTCTGTGAAAGCCAATCTTGTAAAGGATTTTGAT
AAAGTGGAAATGATTCTTCAAGCGTTAGAGTATGAGAAGGAGCATGGGAAAGTGCTAGAT
GAGTTTTTTCTCTCTACTGCTGGCAAGTTCCAGACAGAGATTGGCAAGAGCTGGGCTGCT
GAAGTGAATTCAAGGAGAACCAATGGATGTGGACAGAACTAGGGGTACTCGATGTTTGGT
GCTTGATACAGCCTCTACGAAATTTTCATGATGGGTTGTGCGGCGAATCTCAGGCTCCAG
ATTCAAGCCCGCTTAGAGGCAAACAAACATAACAAATTTGCCTCAGCTATCAGGTGCTGG
TAAGGAATAACGGGAATGGCATTGACAAAAACTCAGGGATCTAAGTTTGGTTAGAGCTAA
GTGGGTTGAATGTGTGCACTGAGACTAGCAGTACGTATTGAGCAGTTTTTATGTATACTG
TTGGTTAATAGTAGGAACTTAGGATCCAGGGAAACGTTGTTTTTTCTTGAGTCGGGGAAA
TAAAAAGGCAGGCTGGGGGCTGTTCTCCACTGCTACCTTCCTTCGGTTGAAGTTGATCTC
TATTATTGCTTTGTGCAAATTAATCATTTCACTCATAAAAAAAAAAAAAAAAA

Homology of Contig U35_8113 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None