barSeed - Barley Seed Development Database

Probe CUST_575_PI390587928

Source Contig U35_14098

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_575_PI390587928	Hv_44K_v2	GTTTCTTGGCGGTGGTACGATCAGAGTTACAGGAATCAATAATGGGGTTACGAAGGTAAA	2763	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.428	1.108	1.239	1.024	0.326	0.283
Raw	1089.567	1336.189	1317.712	1664.760	194.567	179.362

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75180.2	4477	9e-22	2357 - 2414	98	57 / 58	plus	ABC00071 ABC00091 ABC00416 ABC00568 ABC24078
MLOC	MLOC_75180.1	3172	9e-22	2357 - 2414	98	57 / 58	plus	ABC00071 ABC00091 ABC00416 ABC00568
MLOC	MLOC_75180.3	4541	9e-22	2357 - 2414	98	57 / 58	plus	ABC00071 ABC00091 ABC00416 ABC00568 ABC24078
JLOC1	JLOC1_50142.3	2909	5e-22	2667 - 2724	98	57 / 58	plus
JLOC1	JLOC1_50142.2	3014	5e-22	2772 - 2829	98	57 / 58	plus
Harvest21	ABC31031	351	3e-25	278 - 337	100	60 / 60	plus
Harvest21	ABC00416	1053	6e-22	15 - 74	97	58 / 60	minus	ABC00416
Harvest21	ABC00091	2929	8e-21	2748 - 2805	97	56 / 58	plus	ABC00091
Harvest35	U35_14098	2837	3e-25	2764 - 2823	100	60 / 60	plus
Harvest35	U35_14103	2968	8e-21	2716 - 2773	97	56 / 58	plus

Contig Sequence (2837 bp)

>U35_14098 2837 Hv_44K_v2
GTCCCCCGGGCTGCAGGATTCGGAACACTCACCAGTTTTGGTTGCAGCAGGCAGAGTGAA
GCGGCCGGCGACGATGCGCAAGTGGGCGCTCTCCTGCGCGCTCCTCCTCGTCCTCCTCCT
CACCACCCTCCCCGATCCAGCTAAGAAGCTCCAAGTCAATGCCGAGGAGAGCAGCGACGA
GGTTGGCGATTTTCCCAAGGTAGAGGAGAAGCTTGGGGCCGTGCCCCATGGCTTGTCCAC
CGACTCCGAGGTTGTCCAGAGGGAGTCCGAGTCGATCTCGAGGAAGACCCTCAGGAACTC
GGCCGAGAAGTTTGAGTTCCAGGCCGAGGTGTCCAGGCTCATGGACATCATCATCAACTC
ACTCTACAGCAACAAGGACATCTTCCTGAGGGAGCTCATTTCCAATGCATCTGATGCTTT
GGACAAGATTAGGTTCCTTGCCCTCACCGATAAGGAGGTTATGGGTGAAGGTGACACTGC
TAAGCTTGAAATCCAGATTAAGTTGGATAAGGAGAACAAGATTCTCTCTATTCGCGATAG
GGGTGTTGGTATGACCAAGGAAGATCTCATTAAGAACCTTGGAACCATTGCCAAGTCTGG
AACTTCAGCTTTTGTGGAAAAAATGCAGACTGGAGGTGACCTCAATCTCATTGGGCAGTT
TGGTGTTGGTTTCTACTCAGTATACCTGGTTGCTGACTATGTTGAAGTGGTCAGCAAGCA
CAACGATGACAAACAGTATGTATGGGAGTCCAAAGCTGATGGATCATTCGCTATTTCTGA
GGATACATGGAATGAACCCCTGGGCCGTGGAACTGAGATCAAACTGCATCTCCGCGATGA
GGCTAAGGAGTACTTGGAAGAAGGAAAGCTGAAGGACTTGGTGAAGAAGTACTCTGAGTT
CATCAACTTCCCCATCTACTTGTGGGCAACCAAGGAGGTTGATGTTGAAGTGCCAGCTGA
TGAGGAGGAATCAAACGAAGAGGAGGAATCAACCACAGAGACCACAGAGGAAGAAGAGAC
AGAAGATGATGAAGAGAAGAAGCCTAAGACAAAGACTGTAAAGGAAACTACTACTGAATG
GGAGCTTCTTAATGATATGAAGGCCGTGTGGCTTCGTAGCCCCAAGGAGGTTACCGAAGA
GGAGTATGCAAAGTTTTACCACTCACTTGCTAAGGACTTTGGTGACGACAAGCCTATGTC
TTGGAGCCACTTCAGTGCTGAGGGAGATGTTGAGTTCAAAGCTTTGCTCTTTGTTCCCCC
GAAGGCTCCACATGATCTGTACGAGAGCTACTACAATGCTAACAAGTCAAACCTCAAGCT
GTATGTTAGAAGGGTTTTCATCTCTGATGAATTCGATGATCTTCTTCCAAAGTACCTCAG
CTTTTTGATGGGTATTGTTGACTCAGACACATTGCCCCTCAATGTATCCCGAGAAATGCT
TCAACAACATAGCAGTCTGAAGACCATCAAGAAGAAACTGATCCGCAAGGCTCTTGACAT
GATTAGGAAACTTGCTGAGGAGGATCCTGATGAGTACAGCAACAAAGAAAAGACAGATGA
TGAAAAGAGTGCAATGGAGGAGAAGAAGGGCCAGTATGCCAAGTTCTGGAACGAGTTTGG
CAAATCAGTCAAGCTGGGAATCATTGAAGATGCAACAAACAGGAACCGTCTTGCAAAGCT
TCTGAGATTCGAGAGTTCCAAGTCAGATGGCAAACTTGTCTCCCTTGATGAGTATATTTC
AAGGATGAAATCAGGGCAGAAGGACATCTTCTACCTTACAGGAAGCAGCAAGGAACAGCT
AGAGAAATCTCCATTCCTTGAGCAGCTAACCAAGAAAAACTACGAGGTTATCTACTTCAC
CGACCCCGTGGATGAGTACCTGATGCAATACCTCATGGACTACGAGGACAAGAAGTTCCA
GAACGTGTCCAAGGAGGGCCTGAAGCTCGGCAAGGACTCGAAGCTCAAGGACCTCAAGGA
GTCGTTCAAGGAGCTGACCGACTGGTGGAAGAAGGCCCTGGACACGGAGGGCATTGACTC
TGTGAAGATCAGCAACCGGCTGCACAACACCCCCTGTGTGGTGGTCACCTCCAAGTATGG
GTGGAGCTCCAACATGGAGAAGATCATGCAGGCACAGACCCTGTCGGACGCGAGCAAGCA
GGCGTACATGCGCGGCAAGAGGGTCCTGGAGATCAACCCCCGGCACCCCATCATCAAGGA
GCTCCGTGACAAGGTCGCCCAGGACAGCGATAGCGAGGGCCTGAAGCAGACGGCGAGGCT
GGTGTACCAGACGGCGCTGATGGAGAGCGGGTTCAACCTGCCTGACCCCAAGGACTTTGC
GTCGAGCATCTACCGGTCGGTGCAGAAGAGCCTGGACCTGAGCCCGGACGCGGCCGTGGA
GGAGGAAGAGGAGGTGGAGGAGCCCGAGGTGGAGGAGAAGGAGTCGGCCAAGCAGGAGGC
GGAGGAGCCTGAGCACGAGCAGTACGACAAGGACGAGCTGTAGTTTGCTCATGTCGCCCC
GCCCATTTAGCTCTCATTAGAAAGAAGTGTTGGACTGGAAATGTGATGGTTTTGAGGGAC
GTCCATTTTTACCGCGCGGAAGACGATTAATCATCGATCGTGATACGGGGTTTTGTCCGT
GTAATGTACTACTGTACCTAGTTTCTTGTTTAATGACGATACCCTAGCTAGTTGGAAAAA
AAAAAAAGGAATTACTCAAAAAAAAAAAAAAAAATGTTTTGTATACTTTTATATGCTGTT
TTGGTTTCTTGGCGGTGGTACGATCAGAGTTACAGGAATCAATAATGGGGTTACGAAGGT
AAAAAAAAAAAAAAAAA

Homology of Contig U35_14098 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g50300.1	813	protein\|heat shock protein, putative, expressed
Brachypodium v1_2	Bradi1g30130.1	808
Arabidopsis v10	AT4G24190.1	823	\| Symbols: SHD, HSP90.7, AtHsp90.7, AtHsp90-7 \| Chaperone protein htpG family protein \| chr4:12551902-12555851 REVERSE LENGTH=823