barSeed - Barley Seed Development Database

Probe CUST_5759_PI390587928

Source Contig U35_8120

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5759_PI390587928	Hv_44K_v2	TCTGGTGAGGTTATGAAAAACACCATCTTTTGTACTTGTCTGCTTGTTGTTAGATGCTAA	425	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.484	1.288	1.128	0.964	0.413	0.385
Raw	2269.133	3169.168	2386.703	3207.987	477.093	489.118

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_79952.1	2204	2e-24	335 - 394	100	60 / 60	minus	ABC31835
JLOC1	JLOC1_53235.1	2201	8e-25	332 - 391	100	60 / 60	minus
Harvest21	ABC31835	486	3e-25	38 - 97	100	60 / 60	minus	ABC31835
Harvest35	U35_8120	538	3e-25	426 - 485	100	60 / 60	plus

Contig Sequence (538 bp)

>U35_8120 538 Hv_44K_v2
GATTGATGAAGCCCATTCTCTACTTCGCGAAGCTAAGAAGATCCATCCAAAACCAAGCAG
GGTTACTTATCACATTCTAATCCGTGGTTACTGCAAGATGGAGGAGTTTGAGAAGGCCCT
GGAGTGCCTAAAGGAGATGAAGGAGGATGGGTTGCAGCCAAACATGGATGAGTATAACAA
ACTCATCCAGTCGTTATGTCTGAAGGCTATGGACTGGAGGACAGCTGAGAAGCTCCTTGA
GGAAATGGAGGGCAGTGGGTTATGCCTTAAGGGCATTACCCGCAGCCTCATAGCAGCAGT
CAAGGAGTTGGAAATGGAAGAGGCGTCAAAAGACAGCCAAGAAGCATAGTTTCTCTAGGA
TACGCTTGAAGTGACACAGCCACTAATCAGTTTTGCGGAATCACCCTCTTTTTGCTCTCT
GCATCTCTGGTGAGGTTATGAAAAACACCATCTTTTGTACTTGTCTGCTTGTTGTTAGAT
GCTAAAATAATATTGCATTTGTATTATAAATGCTGGACCTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_8120 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g67210.1	565	6e-61	protein\|PPR repeat domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g57630.1	553	4e-68
Arabidopsis v10	None