barSeed - Barley Seed Development Database

Probe CUST_5758_PI390587928

Source Contig U35_8121

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5758_PI390587928	Hv_44K_v2	CATCTGGTGAAAGTCGGATTGATAATAACAATGGAACCAATTTGCAGCGACGGTCCTTCC	520	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67041.1	2312	2e-24	136 - 195	100	60 / 60	plus	ABC06225 ABC09588 ABC18098
JLOC1	JLOC1_44224.1	757	8e-25	290 - 349	100	60 / 60	plus
JLOC1	JLOC1_44225.3	2614	8e-25	2117 - 2176	100	60 / 60	minus
JLOC1	JLOC1_44225.2	2608	8e-25	2111 - 2170	100	60 / 60	minus
JLOC1	JLOC1_44225.1	2596	8e-25	2099 - 2158	100	60 / 60	minus
Harvest21	ABC18098	611	3e-25	521 - 580	100	60 / 60	plus	ABC18098
Harvest35	U35_8121	611	3e-25	521 - 580	100	60 / 60	plus

Contig Sequence (611 bp)

>U35_8121 611 Hv_44K_v2
GGAACTCATTTCCGTCTCTCAAGCTCGCAGCGCGCGCACCGAGCCGCCGGCGACGACGAC
GATGGCGGCGACCACGGGCCAGGCGGCCCTCCTGGTCCTGCTGCTGGTGACCCTGGGCGG
CGCGGCCAAGGCGCAGCCGCCGCGCGGCACCTGCGGGGCGCAGCTGAGCCAGCTGGCCCC
GTGCGCGCGGTACAGCGTGCCGCCGATGCCGGGGCAGGCGCTCCCGGCGCCCGGGCCCGA
GTGCTGCTCGGCGCTGGGGTCCGTGTCCCGCGACTGCGCCTGCGGCGCCATCGACATCAT
CAACAGCCTCCCCGCCAAGTGCGGCCTCCCGCGCGTCTCCTGCCAGTGATCGCCGCCTGG
CTCCATGCAACGACAAGAGGAACAACTGAAGAAGGCGAGGATGAATAAGACGTCGATGGT
CGGAGCAGACATCGAGTAGTAGTGGTAGTAGTACTCAGTGGCTGTCCGGTTCGCCTAGAT
CGATCTCCTGTGATCCATTAGAGGCTCTCGTGTTTGTTGCCATCTGGTGAAAGTCGGATT
GATAATAACAATGGAACCAATTTGCAGCGACGGTCCTTCCNGACCCCCNNNANNAAAAAA
AAAAAAAAAAA

Homology of Contig U35_8121 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None