barSeed - Barley Seed Development Database

Probe CUST_5757_PI390587928

Source Contig U35_8122

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5757_PI390587928	Hv_44K_v2	TTGATCATGGTGGTGATCTAATGAAAGCAGATGACAAGGGACGCACAATTCTCCACCATG	540	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375150	1779	2e-24	550 - 609	100	60 / 60	plus	None
MLOC	MLOC_44524.1	1514	2e-24	758 - 817	100	60 / 60	minus	None
MLOC	MLOC_44524.2	1281	2e-24	525 - 584	100	60 / 60	minus	None
JLOC1	JLOC1_28861.1	1433	8e-25	707 - 766	100	60 / 60	plus
Harvest21	ABC18142	717	3e-25	541 - 600	100	60 / 60	plus
Harvest35	U35_8122	717	3e-25	541 - 600	100	60 / 60	plus

Contig Sequence (717 bp)

>U35_8122 717 Hv_44K_v2
GGCAGTGCACCAGCACCGGGTTCATCCACTCCGCAGCGCCCTCGCCTTCCCCGCCGCTGG
GCAGCCCAGCCCAGGCTGAAAACCCCAGCTCCCCCGCGCCGCACCGGCACCGGCACCGCA
CTGCAGGGTTCTCCGGCCGTCCGGCGTAGTCCGCCTCCAGCCGCGAGTACGAACGAAACC
GGCGGGACTGGGCCATGGCGGCGGCTCCGTTCGTCTACTGCCCCCCCTCCGACGACGGCG
GCGCCGATGAGAACGCTCTCCTGATGGCGGCGCTCCACGGCAACCTCGACCGCCTCAAAG
GTATTGTAAACAGTCTTACCCGGGGGAATGGCGGCCCATCGGCGATTTTTTCTTTCCACA
AAGATGGTGTTGGTGTGTTGCATGGTGCGGCATGCGGAGGCCATCTGGAGGTTTGCAAGT
ATTTGGTGGAGGAGCTTGGGGGAGATGTGAATGCTCCTGGAATTGGAACTGTAGCTCTAG
GTGCAACTCCGTTTATGATGTCAGCTCAGTCTGGTGATGTTCCCACTGTCAAGTATTTCC
TTGATCATGGTGGTGATCTAATGAAAGCAGATGACAAGGGACGCACAATTCTCCACCATG
CTGCCTCGGCAGGATGCTGCAAGGTAACAGAGTTCCTCCTTTCAAAAGGGGTGCCAGTTG
ACATAGACTGTGGCCGTGGACCACCACTCTTCATGGCTGCTACAAATGAGCAGGATA

Homology of Contig U35_8122 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g08000.2	187	8e-71	protein\|fibronectin type 3 and ankyrin repeat domains 1 protein, putative, expressed
Brachypodium v1_2	Bradi2g04680.1	422	2e-66
Arabidopsis v10	None