barSeed - Barley Seed Development Database

Probe CUST_5748_PI390587928

Source Contig U35_8131

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5748_PI390587928	Hv_44K_v2	GAACGAAAGGATATTGGACTATTGCTACTCTCCTGGTTCAGTTTCGATGTACACAAAAAA	731	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.069	1.921	1.124	0.842	0.333	0.415
Raw	264.644	388.981	197.189	231.169	32.822	42.817

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_8131	802	3e-25	732 - 791	100	60 / 60	plus

Contig Sequence (802 bp)

>U35_8131 802 Hv_44K_v2
GACATCGCTGATCACATTAAACCAAAGGAGACAACTAGCAGATCCTCTGAGTTATGCTGA
GGTGAATGCAGATGCTGGTCAGACTTCACCCACTAACATTGTGGCTATGGGGCTGGATGA
AGCAGATTATGAAGACAATGCATCTGAAGATGGTTCTATAGTAAGAGAAACGGAGTATAT
TATTGGCAGGAGGAATATTATGAACTCCAACTCAGACATAATCGATGATACCACAATGCA
TAGAGGTCAATCACGAATAGCCAGATCCTCTCTCACAAAAAGCGCACAGCCAGCAATATC
CAAATCAAAACCAAGGGATGCAGTTTTGAAGACTCCAAGTCACACAAGGACTTCATCCAA
CCAATTGGCGGGAGGCTCTTCGGCCAGAGCAACCAAAAGATGGCAGAAGTAGAGCACGTA
CTAGCTGCTCGGATGTACTGTATTTTGTATGCTGACTGTAACTCGACGAGGCAAGGAAGG
TGGAAATAGATGGGGGTAGCTGTAGGATAAATGCATGCTTGTAACTCAAGAAATGGGAAA
CAAACCGCTGACAAGGGAGCAAGGCTATGGTATATGTGCCCTGTTTCCATTCTGACGAGG
ATGTGTGCATTGTTCAGAGATTCTGGCATGTTCATAGCTTCGATGACAATTGACTGAGTT
TTTGTATTTGGTCTGTGCGACGAGGGTTTGATATTGTGGTCCTTGGGGTCGGTCGATTAT
CTATCCGAAAAGAACGAAAGGATATTGGACTATTGCTACTCTCCTGGTTCAGTTTCGATG
TACACAAAAAAAAAAAAAAAAA

Homology of Contig U35_8131 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None