barSeed - Barley Seed Development Database

Probe CUST_5747_PI390587928

Source Contig U35_8132

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5747_PI390587928	Hv_44K_v2	TCTGAGTAAGACGACGCTAAGGTTGCGTTACCTGATCAATTGGTTAGTGACCTCTCTACT	882	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.443	1.202	1.403	1.037	0.258	0.341
Raw	159.659	212.348	207.869	240.589	22.018	30.588

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367148	3542	2e-24	2592 - 2651	100	60 / 60	plus	ABC20954
MLOC	MLOC_79089.1	2703	2e-24	1676 - 1735	100	60 / 60	plus	ABC20954
JLOC1	JLOC1_52704.1	3040	8e-25	1993 - 2052	100	60 / 60	plus
Harvest21	ABC19749	752	3e-25	669 - 728	100	60 / 60	plus
Harvest35	U35_8132	967	3e-25	883 - 942	100	60 / 60	plus

Contig Sequence (967 bp)

>U35_8132 967 Hv_44K_v2
CTCAGATAGGGATGGTGCCAGCACGATTTACGAGGAGAATGAGAGTGTGTCCGTCGGGGA
GGTGATGAAGAGCCCAGTATTCAGTGAGGATGAATTGTCAGAGAGCTCTTTCTGGGTTGA
TTTGGGCCATAGCCCACTTGGTTCAGACCACTCAGAACAGGGGAAGTTGGGATCTCCACT
GCCTGCATCCTGGTTTTCTGGTAGGAAGAACGCAAAGAAGACATCACCAAAGGTGCCATC
CAAACTGGCAAGGAGCCCTATTTATGACAACCATGTCGTGTCCTTCGATGCAGCTGTGAG
GTCAGTATCACAAGAGCTAGAGCATGTGAAGGAAATTCCAGAGGAAGATTGTTCATACAA
TGGAAAGGTCAGCGAAGATTGTTCATATACCGACAAGGTCAGCGAAATTGAAGAATGCCA
AGATGTTCATGAAAATAAGAGGTTTGTAAAATTCTCTTGTGACAATGGGCGCACAGAAGG
CAGTTCGGCATCTGTTTTTGGGGGTTATGCTGCAAATGGGAATGGCTCCACTTCGGAGAT
TTGCTCAGAAAACCAAGTTGAAGCTAAAGACAGTGCCATCAGAAGGGAAACAGAGGGTGA
GTTCCGTCTACTGGGAAGGAGGGAGGCACCGAATAGCAGATTCAATGGTGGCAGGCTCTT
TGGAGTGGAAGAAACAGAACGAGTGTCAAGTATGGGGCGCAAGGTATCATTCACCATGGA
GGATAGTAAGCTGTGTCGCAACGCAGATGCTGGGGAGACATCTGGATATGCAGTTGGAGA
AGAAGAAGAAGATGATGACTACAGCGACTACGATGAGATTCAGGATGGCAGGCGAGAACC
TGAAATCATCTGTAGGCACCTTGATCATGTGAACATGCTGGGTCTGAGTAAGACGACGCT
AAGGTTGCGTTACCTGATCAATTGGTTAGTGACCTCTCTACTGCAGCTTCNGTTGCCTGA
TTCTGGA

Homology of Contig U35_8132 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g55704.1	1060	6e-161	protein\|expressed protein
Brachypodium v1_2	Bradi1g07540.1	931	8e-179
Arabidopsis v10	AT2G23520.1	895	1e-67	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein \| chr2:10014256-10016943 REVERSE LENGTH=895