barSeed - Barley Seed Development Database

Probe CUST_5737_PI390587928

Source Contig U35_8142

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5737_PI390587928	Hv_44K_v2	TAAGGCCCCCAAGATGTACAGAGATATTTAGCTGAGCTGGTTGGAATTTTTCCCAAAAAA	767	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	31.105	5.913	0.739	0.460	1.049	0.950
Raw	206.336	61.050	6.102	4.370	4.078	4.152

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2711.1	572	6e-24	278 - 336	100	59 / 59	plus	ABC18532
JLOC1	JLOC1_1623.1	442	3e-24	288 - 346	100	59 / 59	plus
Harvest21	ABC18532	426	3e-25	11 - 70	100	60 / 60	minus	ABC18532
Harvest35	U35_8142	837	3e-25	768 - 827	100	60 / 60	plus

Contig Sequence (837 bp)

>U35_8142 837 Hv_44K_v2
CAAGCCAGGCTAGCGATCGATCGATCTCATCGCCGTCGACTCGAGCTCCAGCTCCATCAC
CGGCCGGCGACGACGACATGGGCAACAGCCTGCGGTGCTGCCTGACCTGCATGCTCCCCT
GCGGCTCCTTCGACGTGGTCCGCATCGTCCACCTCAGCGGCCGCGTCGACGAGTTCAGCT
GCCCGATCACCGGCGGGGCCGTCCTCGCCGCGCACCCCAACCACACCATCGCCACGGCGT
GGTCCTCCGCCGGCGTCGGGTGCCCCACCAAGAAGCTCGTCATCGTGTCGCCCGACGCCG
AGCTCAAGCGCGGGCGCATCTACTTCCTCATCCCGTCCGCGACGGTGCCGGCGGCCGACA
GGAGGAAGAAGAGCCGGCCGGGCTCCAAGAAGAGCAAGCGGCCGAGCAGCCGGGGCAAGA
GCGGCGGCACCGCGGAGCAGGATAACTACCTGACGGAGCTGCTGTCCGAGAAGACCGCGT
CGGGCGCCCACCGGAGGCGGCGGAGCGGCTGCAGGGTCGGCGTGTGGCGGCCGGAGCTCG
AGAGCATAGTGGAGGAGGCCTCGGAGTAGAGGGGGCTCGAAGAGCTCTCTCATGTTTCTT
TAACCCCTCCCCCCTACCATTCTTGCTTCCTCTCCGTCTTCCGATGTGAATACCACGATC
GACGAGAACGTATTTCCAGTTCTCACTTTTCGATGCCCTGACACATGTATAGCGATGTAC
AGAGGGTTTAGTGGTTTTTTAGATCGGAGATGAGAGGAAAATATTTGTAAGGCCCCCAAG
ATGTACAGAGATATTTAGCTGAGCTGGTTGGAATTTTTCCCAAAAAAAAAAAAAAAA

Homology of Contig U35_8142 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g39710.1	172	2e-61	protein\|expressed protein
Brachypodium v1_2	Bradi2g53770.1	167	9e-83
Arabidopsis v10	None