barSeed - Barley Seed Development Database

Probe CUST_5734_PI390587928

Source Contig U35_8145

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5734_PI390587928	Hv_44K_v2	GGAATGTATCTGACAATGTATGGTCATGTAGTGATTGGTTGGGTCTGTGTCTATAAAAAA	1005	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.076	1.552	1.410	1.100	0.464	0.462
Raw	2120.330	4785.737	3748.100	4458.777	692.864	738.263

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374641	2244	7e-23	2149 - 2205	100	57 / 57	plus	None
MLOC	MLOC_40508.1	1015	7e-23	218 - 274	100	57 / 57	minus	None
MLOC	MLOC_40508.2	329	7e-23	55 - 111	100	57 / 57	minus	None
JLOC1	JLOC1_26470.1	1052	4e-23	114 - 170	100	57 / 57	minus
Harvest35	U35_8145	1076	3e-25	1006 - 1065	100	60 / 60	plus

Contig Sequence (1076 bp)

>U35_8145 1076 Hv_44K_v2
GATTAGTATGGCTGTACACAGAAACTTATTGCGTCTTCGTGGATTCTGTATGACACCAAC
AGAAAGGTTGCTTGTGTACCCATACATGGCTAACGGAAGTGTTGCATCACGTCTAAGAGA
ACGAGGGCCAGCTGAACCGCCACTGGATTGGCAAACGAGAAGAAGAATTGCATTGGGTTC
TGCCAGGGGCCTCTCCTATTTACATGATCACTGTGATCCAAAGATCATCCATCGTGATGT
GAAAGCTGCAAATATTTTATTAGATGAAGACTTTGAAGCTGTAGTGGGGGATTTTGGTTT
GGCCAAACTAATGGATTACAAGGATACCCATGTAACAACTGCTGTGCGTGGAACAATTGG
GCATATCGCACCAGAATATCTTTCAACAGGAAAATCCTCAGAGAAAACTGATGTATTCGG
TTATGGAATTATGCTTTTGGAGCTTATTACAGGACAGCGTGCTTTTGATCTTGCTCGGCT
TGCCAATGACGACGATGTCATGCTACTTGACTGGGTGAAAGGATTGCTCAAGGAGAGAAG
ACTGGAGATGTTGGTGGATCCAGACCTACAGACCAACTACATTGATGTTGAGGTGGAATC
GCTGATCCAGGTTGCGCTCCTTTGCACACAGGGCTCCCCCATGGAGCGCCCTAAGATGTC
GGAAGTGGTAAGGATGCTCGAAGGCGATGGTCTCGCGGAGAGATGGGACGAGTGGCAAAA
GGTAGAGGTCTCACGGCAGGAGGTAGAGCTGGGTCCTCATCGAAACTCAGAGTGGATCGT
CGATTCCACTGATAGCCTCCACGCAGTTGAGCTATCAGGGCCAAGGTGATGATGGCTGCT
GCTAAATTAAGGTCACATATTTTGTATAAGTACGAGCATGTGCAAACTCCTATTTGTTCA
TATCAGCCAATGGAAAAAAAATTGTAGTGGCAGCCACAATGTGTTTTGATGTATGCCCTT
GGAAGTTGGAACGGGTGCACTCCTACTGACCAAATGTTGCAGCAAGGAATGTATCTGACA
ATGTATGGTCATGTAGTGATTGGTTGGGTCTGTGTCTATAAAAAAAAAAAAAAAAA

Homology of Contig U35_8145 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g07760.1	625	0.0	protein\|BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
Brachypodium v1_2	Bradi3g15660.1	565	0.0
Arabidopsis v10	AT1G71830.1	625	1e-175	\| Symbols: SERK1, ATSERK1 \| somatic embryogenesis receptor-like kinase 1 \| chr1:27018575-27021842 FORWARD LENGTH=625