barSeed - Barley Seed Development Database

Probe CUST_5731_PI390587928

Source Contig U35_8149

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5731_PI390587928	Hv_44K_v2	TACTTGGAAGTACATCTACTCCTGGGAATATTGCTGTGTTGGATGTAGTTACACAACCTA	1241	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17847.2	3514	2e-24	2735 - 2794	100	60 / 60	plus	ABC20050
MLOC	MLOC_17847.3	3975	2e-24	3196 - 3255	100	60 / 60	plus	ABC20050
MLOC	MLOC_17847.4	3507	2e-24	2725 - 2784	100	60 / 60	plus	ABC20050
MLOC	MLOC_17847.5	3433	2e-24	2647 - 2706	100	60 / 60	plus	ABC20050
MLOC	AK372475	3448	7e-23	2674 - 2733	98	59 / 60	plus	ABC20050
JLOC1	JLOC1_12326.2	3426	8e-25	2647 - 2706	100	60 / 60	plus
JLOC1	JLOC1_12326.1	3379	8e-25	2600 - 2659	100	60 / 60	plus
Harvest21	ABC24324	639	1e-24	581 - 639	100	59 / 59	plus
Harvest35	U35_8149	1301	3e-25	1242 - 1301	100	60 / 60	plus

Contig Sequence (1301 bp)

>U35_8149 1301 Hv_44K_v2
CTCGAGCGGCCGCTACCTTGCACATGTGGTGATTCCTGACGATCTTGATCTTTCTCAGGA
CTCCATACTGCACAATGTTGATGAACAGGCTGTTCGTAGTTTAAATGGGTGTCGAGTTAC
TGATCAAATCTTACGATTGGTCCCAAACATTCCGAGTTTTCGCACAACCTTAAGGTTCAT
GAGATACTGGGGGAAGCGCCGTGGGGTGTACTCAAATGTTATGGGATTCTTGGGTGGCAT
AAATTGGGCAATTCTTGTTGCTCGTATATGTCAATTGTACCCAAATGCATCGCCCAGCAT
GTTGATATCTCGATTTTTCAGAGTCTACAGCCAGTGGAAGTGGCCCAACCCTGTTACACT
TTGCCATATTGAGGAGGGTCCTCTTGGCCTCCCTGTTTGGGATCCAAGAAGAAACTTTAG
AGACAGGGGCCATCAGATGCCTATAATTACACCCGCCTATCCTTGTATGGATTCTAGTTA
TAATGTATCTACTAGTACTAGGTATGTGATGATTCAAGAATTCACACGAGGATACGAGAT
CTGCCAGGCAATAGATGAAAATAGAGCAACCTGGGATGATTTATTCGAGCCATATCCATT
TTTTGAATTATACAAAAATTATTTGGAGGTTGGTACCACAGCGAGAAGTGAAGATGACCT
CCGGAATTGGAAAGGTTGGGTAGAGTCTCGCCTTCGGACCCTTGTATTAAAGTTTGAACG
GTATACTCATGAGATGCTCCTTGCACATCCGCATCCCAGGGATTTCTCTGATGGATCCAG
ACCGTTGCATAGTTTTTACTTCATGGGTCTTTGGAGAAAACAAACTGCCCAACCTCAAGA
AGCTGAGCAATTTGACATCAGAGGAATCGTAAATGAGTTTAAGAGCGCAGTTCTTGCTTA
TGCACATCGGAGAGAAGGAATGGATATTGAAGTGTCTCATGTAAAAAGAAAAGATATCCC
TTTATTTGTTTTTCCTGGTGGAGTGCGCCCTCCTCGTTCTTCCAGAACAGCAGCTAGGAG
CAGTCGCACTGTTTCTAGGAACGTTGTTACAGCTGATGGTCAAGTTGGAAATCCATTGGG
AGCTGAAAGTTGGAGTGATCCTCAATCTGCTCTAGATCATTCTGGTGGCTATCAAAGTAC
TTTGTTGGTCCCCAGTGTATCAAGTAAAGAAACCCCAAGTATTTTGAATGGGCATTCAAA
TCTTCACACAGAATCAGTTGAGCACGAACATCCAGGGCACTTACTTGGAAGTACATCTAC
TCCTGGGAATATTGCTGTGTTGGATGTAGTTACACAACCTA

Homology of Contig U35_8149 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g21470.2	747	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi3g03930.1	762	0.0
Arabidopsis v10	AT1G17980.1	713	3e-154	\| Symbols: PAPS1 \| poly(A) polymerase 1 \| chr1:6187742-6191418 REVERSE LENGTH=713