barSeed - Barley Seed Development Database

Probe CUST_5728_PI390587928

Source Contig U35_8152

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5728_PI390587928	Hv_44K_v2	GTCTTGAATAGTGATGGTGATAGTTTAAAGTTTAAAGTCTCAACGCATTTAGCGTGATGT	946	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.120	2.218	1.391	0.787	0.215	0.224
Raw	400.307	665.314	364.526	316.028	31.339	35.401

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_18882.1	1539	8e-25	1407 - 1466	100	60 / 60	plus
Harvest35	U35_8152	1025	3e-25	947 - 1006	100	60 / 60	plus

Contig Sequence (1025 bp)

>U35_8152 1025 Hv_44K_v2
GTTGAGAACCTGCGGAGTGCCATGAGCCATCCCCAAGCTCTTGCACAGTGTGAGCAAACA
CTGACAAAGCTAGGAATTGAACATAGAGAAGCTGTTGATGACACAGCCGGCGCAGCCAAG
CACATTGCAGAACAAAATCTCCAAGACACCGCTGCAGTTGCCAGTTCGTTGGCTGCTCAA
CTTTATGGACTGGATATTCTTGCAGAAAATATCCAGGATGACGCGGATAATGTGACCCGC
TTTATGATGCTGGCTCGGGAACCCATTATTCCTCGCACTGATAAGCCATTCAAGACTAGC
ATAGTGTTCTCTCTGGAAGAAGGACCTGGACAGCTTTTCAAGGCGCTTGCAGTGTTTGCT
CTGAGGAAAATTAACCTCACCAAGATGGAAAGCCGTCCACACAAGAAAAGGCCTCTACGT
GTGGCTGATGACAACTCCACGCCGCTCAAGCACTTCGACTACCTTTTCTACGTAGATTTC
GAGGCGTCGATGGCTGATCCAAATGCACAAAATGCTCTCAGTAACTTAAAGCAAGAGTTT
GCCACCTTCCTAAGAGTTCTTGGGAGCTATCCTACCGATGTTACCGAAGCATGAATGCCG
GGCACCTGAGCAAACAACATCCTCCTTTCCCTTGGTCGTCGATATTTCGCTCTCGAAGAG
AAGCATTTTTGTCACCGGTCTGTCACGATGAAGAGATCCACCTGGCAGTTTTTAGCTCCA
TGATTCAGTAAATCTTCCTGGGGGGCTACTCTGTTCTTTCCATGGGGACAGTAGTTCTCC
AGATATTCTTTATTATCCTGTGAATGTGAGGGAGAACTCTCAACATATACATCTATTTTG
CCTAAGAGTTCGCAAAATGACGAGCTTTTATTATTATAGGAGTGCTTGCTGGAGAACAGT
GTTGGTCGGTTTGTGTGTCTTTTTCTAGAATACGATTGGTTTGTTTGTCTTGAATAGTGA
TGGTGATAGTTTAAAGTTTAAAGTCTCAACGCATTTAGCGTGATGTTTAAAAAAAAAAAA
AAAAA

Homology of Contig U35_8152 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g49390.1	365	2e-120	protein\|P-protein, putative, expressed
Brachypodium v1_2	Bradi1g16517.1	363	7e-128
Arabidopsis v10	AT3G07630.1	381	2e-86	\| Symbols: ADT2 \| arogenate dehydratase 2 \| chr3:2435457-2437530 FORWARD LENGTH=381