barSeed - Barley Seed Development Database

Probe CUST_5727_PI390587928

Source Contig U35_8153

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5727_PI390587928	Hv_44K_v2	GTAAAAAGTACAGAACTATATATTGCCTCTTGTTGTGCCCAGTGATCAGTTTTTGAGGCG	728	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4879.3	4164	2e-24	3922 - 3981	100	60 / 60	plus	None
MLOC	MLOC_4879.1	3082	2e-24	239 - 298	100	60 / 60	minus	None
MLOC	MLOC_4879.2	3072	2e-24	239 - 298	100	60 / 60	minus	None
JLOC1	JLOC1_3097.2	3155	8e-25	2796 - 2855	100	60 / 60	plus
JLOC1	JLOC1_3097.1	1692	8e-25	1333 - 1392	100	60 / 60	plus
Harvest35	U35_8153	907	3e-25	729 - 788	100	60 / 60	plus

Contig Sequence (907 bp)

>U35_8153 907 Hv_44K_v2
TGCAGGAAACTACCAAATTGCCCCCATCTGTGCTCAGAAATATGCCACCCTGGTCAATGC
CCGTCAGTGGATCAGTGCATGAAAAAGGTATGGCATCGGCATATTTATCTGTAACCAGCA
ACTTATCAGGTGCTCGATCTGTTTATTGATGAAACTTATTTTGAGAAGTTTTTTGGATAT
GTTGATTTGTTGAAAAGTTAAAACAAATTTTAATTCTGCAATTTCAAGCTATACATTTTT
ATCTGTATTTATTCCTCTGTATGTTTGATATCTATAAAGGTTAATGTCCGTTGTGCATGC
AACACCCTGAAAAAAGAGTGGGTATGTCAAGATGTTCTCAAGGAGTACCGTCGATCTGGT
CGTGATCCAAAAGAAGTACCTAAAGGTCAATTTGGAGTTGGCCTACTTGCATGTGGTGGA
GATTGCCTGAAAAAGGTCAATGTTTCAGCCGCGGAGTTGCATATCCGGAAAGTTCAGGAG
ACTAAGAACCCTGCTGCGGAAGTCGCAAACGTGCCCAAACGTAGGAAGAAGCGTGACCGT
GGAGCACAGGAACCTGTTCAGGTTTCGATGTGGCAGCAAATCAAGCGGTGTCTCGTGGTG
ATAATTGCGTTGGCTGGATTGGTGGTGCTGGGACTGGTTATTTGGAAAGGCATCTACCAG
ATTTCGGATTGGATGAATGAAATGGAAGAGCAGAAGGCCACGGAAAGGCTTCTGAGGGCT
GGAAGGCTGTAAAAAGTACAGAACTATATATTGCCTCTTGTTGTGCCCAGTGATCAGTTT
TTGAGGCGTGGATNCATAAACAACCGTGGGTCCAGTTTGGAGACATTTANGTGAAAGGAT
GCCATTCTTTCACTCCCTCCCTCATTGTATTCAAACGAAGGTGACTGTNGTATTGTGTCT
GAATTAT

Homology of Contig U35_8153 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g06550.1	910	2e-54	protein\|NF-X1-type zinc finger protein, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	None